Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS11635 and ABZR87_RS11640 are separated by 43 nucleotidesABZR87_RS11640 and ABZR87_RS11645 are separated by 173 nucleotidesABZR87_RS11645 and ABZR87_RS11650 overlap by 4 nucleotidesABZR87_RS11650 and ABZR87_RS11655 overlap by 4 nucleotides ABZR87_RS11635: ABZR87_RS11635 - DHA2 family efflux MFS transporter permease subunit, at 2,465,960 to 2,467,417 _RS11635 ABZR87_RS11640: ABZR87_RS11640 - acyl-CoA-binding protein, at 2,467,461 to 2,467,730 _RS11640 ABZR87_RS11645: ABZR87_RS11645 - tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB, at 2,467,904 to 2,468,641 _RS11645 ABZR87_RS11650: ABZR87_RS11650 - ribosomal protein S18-alanine N-acetyltransferase, at 2,468,638 to 2,469,165 _RS11650 ABZR87_RS11655: ABZR87_RS11655 - uracil-DNA glycosylase, at 2,469,162 to 2,469,968 _RS11655
Group Condition ABZR87_RS11635 ABZR87_RS11640 ABZR87_RS11645 ABZR87_RS11650 ABZR87_RS11655
carbon source Octanoic (C) -0.0 -1.6 N.D. -1.2 N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.2 +0.0 N.D. -2.2 N.D.
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.3 +0.8 N.D. -2.5 N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.3 -0.0 N.D. -1.1 N.D.
no_plant_soil no_plant_soil sample 3; outgrowth in LB -0.0 -0.3 N.D. -1.0 N.D.
rhizosphere rhizosphere sample 7; outgrowth in LB +0.1 -0.4 N.D. -1.0 N.D.
rhizosphere rhizosphere sample 8; outgrowth in LB -0.1 -0.1 N.D. -0.9 N.D.
carbon source Octanoic (C) +0.3 -0.8 N.D. -0.6 N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.0 +0.2 N.D. -1.3 N.D.
root root sample 6; outgrowth in LB +0.2 -0.7 N.D. -0.6 N.D.
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB -0.3 +0.2 N.D. -1.0 N.D.
carbon source Sebacic (C) +0.2 +0.0 N.D. -1.2 N.D.
carbon source Lauric (C) +0.2 -0.3 N.D. -0.7 N.D.
carbon source Heptanoic (C) +0.2 -0.4 N.D. -0.6 N.D.
carbon source Protocatechuic Acid (C) +0.2 -0.1 N.D. -0.9 N.D.
rhizosphere rhizosphere sample 9; outgrowth in LB -0.2 +0.2 N.D. -0.9 N.D.
soil soil EcoFAB sample 2; outgrowth in LB +0.1 -0.2 N.D. -0.7 N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.1 +0.2 N.D. -1.0 N.D.
phage Ra3_0.01 +0.1 +0.1 N.D. -0.9 N.D.
soil soil sample 4; outgrowth in LB +0.2 -0.0 N.D. -0.9 N.D.
carbon source Dodecandioic (C) +0.2 +0.0 N.D. -0.9 N.D.
rhizosphere rhizosphere sample 4; outgrowth in LB +0.2 +0.1 N.D. -0.8 N.D.
carbon source L-Glutamic (C) +0.2 -0.2 N.D. -0.6 N.D.
soil soil EcoFAB sample 1; outgrowth in LB +0.1 +0.4 N.D. -0.8 N.D.
carbon source Dodecandioic (C) +0.2 +0.2 N.D. -0.7 N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.0 +0.5 N.D. -0.6 N.D.
carbon source Pimelic (C) +0.9 -0.3 N.D. -0.5 N.D.
carbon source 4-Hydroxybenzoic Acid (C) +0.2 -0.4 N.D. +0.4 N.D.
carbon source Pimelic (C) +1.0 +0.1 N.D. -0.0 N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.1 +0.4 N.D. +0.6 N.D.
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