Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS11555 and ABZR87_RS11560 are separated by 128 nucleotidesABZR87_RS11560 and ABZR87_RS11565 overlap by 1 nucleotidesABZR87_RS11565 and ABZR87_RS11570 are separated by 3 nucleotidesABZR87_RS11570 and ABZR87_RS11575 are separated by 67 nucleotides ABZR87_RS11555: ABZR87_RS11555 - CysB family HTH-type transcriptional regulator, at 2,449,864 to 2,450,823 _RS11555 ABZR87_RS11560: ABZR87_RS11560 - 2TM domain-containing protein, at 2,450,952 to 2,451,263 _RS11560 ABZR87_RS11565: ABZR87_RS11565 - sensor histidine kinase, at 2,451,263 to 2,452,537 _RS11565 ABZR87_RS11570: ABZR87_RS11570 - LytTR family DNA-binding domain-containing protein, at 2,452,541 to 2,453,380 _RS11570 ABZR87_RS11575: ABZR87_RS11575 - thiamine pyrophosphate-binding protein, at 2,453,448 to 2,455,163 _RS11575
Group Condition ABZR87_RS11555 ABZR87_RS11560 ABZR87_RS11565 ABZR87_RS11570 ABZR87_RS11575
nitrogen source nitrogen source Ammonium chloride 20mM -2.1 -0.1 -0.1 -0.2 +0.2
nitrogen source nitrogen source Ammonium chloride 20mM -1.6 -0.3 -0.0 -0.0 +0.1
carbon source Octanoic (C) +0.0 -1.2 -0.4 +0.0 -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.3 -1.1 -0.1 +0.3 -0.2
nitrogen source nitrogen source nitrate 20mM -1.0 -0.3 -0.1 -0.0 +0.1
carbon source Carbon source D-Glucose 10 mM -1.1 +0.0 -0.1 -0.2 -0.0
nitrogen source nitrogen source nitrite 5mM -0.7 -0.4 -0.1 -0.0 -0.0
nitrogen source nitrogen source nitrate 20mM -0.8 -0.2 -0.3 -0.0 +0.1
nitrogen source nitrogen source nitrate 5mM -0.5 -0.6 -0.2 +0.2 +0.1
nitrogen source nitrogen source nitrite 5mM -0.4 -0.7 -0.1 +0.1 +0.1
root root sample 5; outgrowth in LB -0.0 -0.4 -0.2 -0.6 +0.5
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.7 -1.3 -0.2 -0.1 +0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.4 +0.3 +0.3 -0.7 -0.0
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB +0.1 -0.8 -0.1 +0.3 -0.0
rhizosphere rhizosphere sample 3; outgrowth in LB +0.0 -0.5 -0.3 +0.2 +0.3
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.3 +0.4 -0.4 -0.3 +0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.1 -0.8 +0.1 +0.2 +0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.5 -1.1 -0.1 +0.5 -0.1
carbon source Pimelic (C) +0.1 -0.8 +0.0 +0.4 +0.1
nitrogen source nitrogen source nitrite 0.5mM -0.1 +0.3 +0.2 -0.3 -0.3
rhizosphere rhizosphere sample 2; outgrowth in LB +0.2 -0.4 +0.2 +0.2 -0.2
nitrogen source nitrogen source nitrite 0.5mM -0.3 +0.6 -0.3 -0.1 +0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.5 +0.2 +0.5 +0.3 -0.0
root root sample 6; outgrowth in LB +0.3 +0.0 +0.3 -0.3 +0.3
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB +0.3 +0.6 -0.1 -0.1 +0.1
phage Ra1_0.1 +0.8 +0.5 +0.1 -0.4 +0.1
soil soil EcoFAB sample 1; outgrowth in LB +0.2 +1.3 -0.3 +0.0 -0.0
rhizosphere rhizosphere sample 6; outgrowth in LB +0.3 +0.5 +0.2 +0.0 +0.2
phage Ra3_1 +0.6 +0.3 +0.1 +0.2 +0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.3 +1.8 +0.1 -0.1 +0.1
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ABZR87_RS11560
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