Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS11245 and ABZR87_RS11250 are separated by 74 nucleotidesABZR87_RS11250 and ABZR87_RS11255 are separated by 24 nucleotidesABZR87_RS11255 and ABZR87_RS11260 are separated by 90 nucleotidesABZR87_RS11260 and ABZR87_RS11265 are separated by 74 nucleotides ABZR87_RS11245: ABZR87_RS11245 - translational GTPase TypA, at 2,388,214 to 2,390,034 _RS11245 ABZR87_RS11250: ABZR87_RS11250 - cystathionine beta-lyase, at 2,390,109 to 2,391,296 _RS11250 ABZR87_RS11255: ABZR87_RS11255 - rhodanese-like domain-containing protein, at 2,391,321 to 2,392,910 _RS11255 ABZR87_RS11260: ABZR87_RS11260 - cysteine dioxygenase family protein, at 2,393,001 to 2,393,594 _RS11260 ABZR87_RS11265: ABZR87_RS11265 - amino acid ABC transporter ATP-binding protein, at 2,393,669 to 2,394,424 _RS11265
Group Condition ABZR87_RS11245 ABZR87_RS11250 ABZR87_RS11255 ABZR87_RS11260 ABZR87_RS11265
carbon source Octanoic (C) -4.5 +0.2 -0.4 -0.5 -1.8
carbon source Azelaic (C) -3.9 +0.1 -0.5 -0.0 -0.5
carbon source Heptanoic (C) -4.6 +0.0 +0.0 +0.1 -0.2
rhizosphere rhizosphere sample 8; outgrowth in LB -1.8 -0.1 -1.4 -0.1 -1.2
rhizosphere rhizosphere EcoFAB sample 2; outgrowth in LB -2.7 +0.1 -0.6 +0.0 -1.1
soil soil sample 5; outgrowth in LB -3.8 -0.0 -0.6 +0.2 -0.2
carbon source Heptanoic (C) -3.3 +0.0 +0.1 +0.2 -1.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -2.5 -0.1 +0.1 +0.1 -1.7
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -3.5 -0.1 +0.1 -0.1 -0.3
carbon source Lauric (C) -4.0 +0.0 +0.1 +0.1 -0.3
carbon source 4-Hydroxybenzoic Acid (C) -2.9 -0.2 -0.9 -0.2 +0.4
soil soil EcoFAB sample 2; outgrowth in LB -3.3 +0.0 -1.0 -0.1 +0.6
soil soil sample 9; outgrowth in LB -2.8 +0.0 -0.5 +0.0 -0.5
in planta Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) -3.3 -0.0 -0.2 -0.0 -0.2
carbon source Octanoic (C) -4.5 -0.3 +0.4 +0.3 +0.6
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -3.2 -0.1 -0.2 -0.1 +0.1
soil soil sample 2; outgrowth in LB -3.8 +0.2 -0.3 +0.1 +0.3
soil soil sample 7; outgrowth in LB -2.3 +0.1 -0.3 -0.0 -0.8
root root EcoFAB sample 2; outgrowth in LB -1.7 +0.0 -0.7 +0.1 -1.1
soil soil sample 6; outgrowth in LB -2.6 +0.1 -0.3 +0.1 -0.5
rhizosphere rhizosphere sample 5; outgrowth in LB -2.9 -0.1 -0.8 +0.2 +0.4
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -2.7 +0.2 -0.8 +0.1 +0.2
rhizosphere rhizosphere sample 1; outgrowth in LB -2.1 +0.1 -0.9 +0.2 +0.3
carbon source Sebacic (C) -3.1 +0.0 +0.5 -0.1 +0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -2.2 +0.4 -0.3 +0.3 -0.4
rhizosphere rhizosphere sample 4; outgrowth in LB -2.3 +0.2 -0.8 +0.2 +0.9
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -2.8 +0.9 -0.3 +0.2 +0.1
root root sample 4; outgrowth in LB -2.0 +0.2 -0.8 +0.2 +0.8
root root EcoFAB sample 1; outgrowth in LB -1.6 -0.3 -0.8 +0.3 +1.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -2.0 +0.3 -0.1 +0.1 +3.8
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ABZR87_RS11245
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