Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS11215 and ABZR87_RS11220 are separated by 2 nucleotidesABZR87_RS11220 and ABZR87_RS11225 are separated by 66 nucleotidesABZR87_RS11225 and ABZR87_RS11230 are separated by 3 nucleotidesABZR87_RS11230 and ABZR87_RS11235 are separated by 66 nucleotides ABZR87_RS11215: ABZR87_RS11215 - 30S ribosome-binding factor RbfA, at 2,381,530 to 2,381,901 _RS11215 ABZR87_RS11220: ABZR87_RS11220 - tRNA pseudouridine(55) synthase TruB, at 2,381,904 to 2,382,860 _RS11220 ABZR87_RS11225: ABZR87_RS11225 - DHA2 family efflux MFS transporter permease subunit, at 2,382,927 to 2,384,483 _RS11225 ABZR87_RS11230: ABZR87_RS11230 - HlyD family secretion protein, at 2,384,487 to 2,385,776 _RS11230 ABZR87_RS11235: ABZR87_RS11235 - AdeC/AdeK/OprM family multidrug efflux complex outer membrane factor, at 2,385,843 to 2,387,372 _RS11235
Group Condition ABZR87_RS11215 ABZR87_RS11220 ABZR87_RS11225 ABZR87_RS11230 ABZR87_RS11235
carbon source Octanoic (C) N.D. -2.4 +1.1 -4.6 -5.2
carbon source 4-Hydroxybenzoic Acid (C) N.D. -1.2 +0.5 -5.2 -3.8
carbon source Octanoic (C) N.D. -1.9 +1.6 -4.5 -4.4
carbon source Heptanoic (C) N.D. -1.5 +0.4 -2.5 -2.4
carbon source Heptanoic (C) N.D. -1.2 +0.6 -1.6 -1.8
carbon source Lauric (C) N.D. -1.1 -0.6 -0.5 -0.6
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -0.8 +0.2 -0.2 -0.1
soil soil EcoFAB sample 2; outgrowth in LB N.D. -1.0 +0.6 +0.4 +0.2
soil soil sample 9; outgrowth in LB N.D. -0.5 +0.6 +0.3 -0.1
no_plant_soil no_plant_soil sample 3; outgrowth in LB N.D. -0.8 +0.5 +0.5 +0.3
no_plant_soil no_plant_soil sample 1; outgrowth in LB N.D. -0.6 +0.3 +0.5 +0.3
carbon source Trans-2-methyl-2-butenoic (C) N.D. -0.3 -0.1 +0.4 +0.5
carbon source Sebacic (C) N.D. -0.8 +0.1 +0.6 +0.8
carbon source Trans-2-methyl-2-butenoic (C) N.D. -0.2 -0.1 +0.5 +0.5
rhizosphere rhizosphere EcoFAB sample 2; outgrowth in LB N.D. -0.4 +0.4 +0.4 +0.3
carbon source Dodecandioic (C) N.D. -1.1 +0.7 +0.8 +0.3
carbon source Dodecandioic (C) N.D. -0.8 +0.5 +0.7 +0.4
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB N.D. -0.8 +0.8 +0.8 +0.3
root root sample 6; outgrowth in LB N.D. -0.5 +0.6 +0.9 +0.0
no_plant_rhizosphere no_plant_rhizosphere sample 1; outgrowth in LB N.D. -1.0 +1.4 +0.4 +0.3
carbon source Valeric (C) N.D. -0.3 -0.1 +1.1 +0.6
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -0.4 +1.2 +0.4 +0.1
carbon source Valeric (C) N.D. +0.0 -0.0 +0.8 +0.6
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB N.D. -0.4 +1.5 +0.3 +0.1
carbon source Azelaic (C) N.D. -1.0 -0.6 +2.1 +1.4
carbon source Pimelic (C) N.D. +0.0 -0.3 +1.4 +1.3
carbon source Hexanoic (C) N.D. -0.3 -0.2 +2.1 +1.1
carbon source Pimelic (C) N.D. -0.0 -0.1 +1.5 +1.4
carbon source Hexanoic (C) N.D. -0.3 +0.0 +2.0 +1.1
carbon source Sebacic (C) N.D. -1.4 -0.1 +4.4 +3.9
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ABZR87_RS11220
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