Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	ABZR87_RS11165	ABZR87_RS11170	ABZR87_RS11175	ABZR87_RS11180	ABZR87_RS11185
soil	soil sample 4; outgrowth in LB	-0.4	-3.5	+1.0	-0.9	-0.8
rhizosphere	rhizosphere sample 3; outgrowth in LB	-1.1	-2.2	+0.9	-1.1	-1.0
root	root EcoFAB sample 1; outgrowth in LB	+0.0	-3.5	+0.0	-1.0	-0.1
soil	soil sample 1; outgrowth in LB	-0.2	-3.3	-0.1	-0.5	-0.3
rhizosphere	rhizosphere sample 2; outgrowth in LB	-0.2	-2.4	+0.5	-0.9	-1.0
soil	soil EcoFAB sample 1; outgrowth in LB	+0.1	-3.6	-0.1	-0.4	+0.1
in planta	Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB	-0.2	-4.2	-0.0	+0.3	+0.4
rhizosphere	rhizosphere sample 1; outgrowth in LB	-1.1	-0.8	+0.3	-0.4	-1.2
phage	Ra3_0.1	-0.5	-1.7	-0.0	-0.4	-0.6
rhizosphere	rhizosphere sample 4; outgrowth in LB	-0.4	-1.1	+0.3	-0.9	-1.0
in planta	Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)	-1.2	-0.2	-0.1	-0.5	-1.0
nitrogen source	nitrogen source nitrate 20mM	-0.3	-3.7	+0.5	+0.3	+0.3
soil	soil sample 3; outgrowth in LB	-0.5	+0.4	+0.6	-2.8	-0.6
root	root sample 5; outgrowth in LB	-1.5	+0.3	+0.4	-0.8	-0.9
nitrogen source	nitrogen source nitrite 1mM	-0.1	-2.2	+0.0	+0.1	-0.2
rhizosphere	rhizosphere sample 7; outgrowth in LB	-0.4	+1.0	+0.9	-2.1	-1.1
root	root EcoFAB sample 2; outgrowth in LB	-0.9	+0.4	-0.7	+0.2	-0.8
nitrogen source	nitrogen source nitrate 5mM	+0.0	-1.9	+0.2	+0.3	-0.2
no_plant_soil	no_plant_soil sample 1; outgrowth in LB	-1.2	+1.0	+0.2	-0.4	-1.0
rhizosphere	rhizosphere sample 6; outgrowth in LB	-0.5	+1.1	+0.0	-0.7	-0.8
micoeukaryotes	Acanthamoeba sp., muxed culture-1	+0.2	-1.6	+0.1	+0.3	+0.3
rhizosphere	rhizosphere EcoFAB sample 1; outgrowth in LB	+0.4	+1.3	-0.5	-2.1	+0.3
rhizosphere	rhizosphere sample 5; outgrowth in LB	-0.7	+0.7	+0.4	-0.1	-0.8
root	root sample 4; outgrowth in LB	-0.5	+1.3	+1.4	-1.1	-1.2
rhizosphere	rhizosphere sample 8; outgrowth in LB	-0.6	+1.1	+0.7	-0.4	-0.9
in planta	Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB	-0.4	-1.2	+0.3	+1.2	+0.2
in planta	Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB	+0.2	-1.4	+0.0	+1.5	-0.0
soil	soil sample 9; outgrowth in LB	-0.7	+1.9	+1.4	-0.6	-1.0
carbon source	Octanoic (C)	-0.0	+2.3	+0.2	-0.1	+0.0
rhizosphere	rhizosphere sample 9; outgrowth in LB	-0.4	+3.0	+3.3	-1.4	-0.9