Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS11005 and ABZR87_RS11010 are separated by 145 nucleotidesABZR87_RS11010 and ABZR87_RS11015 are separated by 107 nucleotidesABZR87_RS11015 and ABZR87_RS11020 are separated by 71 nucleotidesABZR87_RS11020 and ABZR87_RS11025 are separated by 116 nucleotides ABZR87_RS11005: ABZR87_RS11005 - ribose-5-phosphate isomerase RpiA, at 2,330,970 to 2,331,656 _RS11005 ABZR87_RS11010: ABZR87_RS11010 - oxidative damage protection protein, at 2,331,802 to 2,332,077 _RS11010 ABZR87_RS11015: ABZR87_RS11015 - amino-acid N-acetyltransferase, at 2,332,185 to 2,333,582 _RS11015 ABZR87_RS11020: ABZR87_RS11020 - ATP-dependent RNA helicase HrpA, at 2,333,654 to 2,337,655 _RS11020 ABZR87_RS11025: ABZR87_RS11025 - YncE family protein, at 2,337,772 to 2,338,767 _RS11025
Group Condition ABZR87_RS11005 ABZR87_RS11010 ABZR87_RS11015 ABZR87_RS11020 ABZR87_RS11025
carbon source Octanoic (C) N.D. -4.2 -4.9 -0.2 +0.1
carbon source Octanoic (C) N.D. -2.3 -3.7 -0.5 -1.8
carbon source Sebacic (C) N.D. -1.7 -3.7 -0.2 -1.1
carbon source Heptanoic (C) N.D. -3.7 -2.3 -0.2 -0.1
soil soil EcoFAB sample 1; outgrowth in LB N.D. -4.1 -1.6 -0.3 +0.2
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB N.D. -4.4 -0.5 -0.3 -0.5
carbon source Heptanoic (C) N.D. -2.8 -2.5 -0.2 -0.2
no_plant_rhizosphere no_plant_rhizosphere sample 1; outgrowth in LB N.D. -2.6 -2.1 -0.2 -0.3
soil soil EcoFAB sample 2; outgrowth in LB N.D. -4.4 -0.2 -0.1 -0.5
carbon source Azelaic (C) N.D. +0.1 -4.6 -0.1 -0.4
rhizosphere rhizosphere EcoFAB sample 2; outgrowth in LB N.D. -3.4 -1.4 -0.2 +0.1
carbon source Dodecandioic (C) N.D. -0.4 -3.6 -0.2 -0.6
root root EcoFAB sample 2; outgrowth in LB N.D. -1.0 -3.1 -0.1 -0.2
soil soil sample 3; outgrowth in LB N.D. -2.8 -1.3 -0.2 +0.0
carbon source Dodecandioic (C) N.D. -0.2 -3.6 -0.0 -0.4
no_plant_soil no_plant_soil sample 2; outgrowth in LB N.D. -2.3 -1.4 -0.0 -0.2
carbon source 4-Hydroxybenzoic Acid (C) N.D. -1.1 -2.4 +0.2 -0.6
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -2.1 -1.4 +0.0 -0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -1.9 -1.8 +0.2 -0.3
nitrogen source nitrogen source nitrate 20mM N.D. -2.7 -1.1 +0.1 -0.1
soil soil sample 1; outgrowth in LB N.D. -1.7 -1.8 -0.1 -0.1
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB N.D. -1.4 -1.7 -0.3 -0.3
soil soil sample 9; outgrowth in LB N.D. -2.5 -1.1 -0.2 +0.1
carbon source succinate (C) N.D. -2.5 -1.2 +0.1 +0.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -1.9 -1.4 -0.2 -0.1
soil soil sample 6; outgrowth in LB N.D. -2.5 -0.6 -0.1 -0.2
no_plant_soil no_plant_soil sample 3; outgrowth in LB N.D. -1.9 -1.6 +0.0 +0.1
soil soil sample 4; outgrowth in LB N.D. -0.9 -2.2 +0.0 -0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -1.0 -2.3 +0.1 +0.2
phage Ra1_0.1 N.D. +1.6 -1.8 -0.1 +0.2
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