Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS10990 and ABZR87_RS10995 overlap by 1 nucleotidesABZR87_RS10995 and ABZR87_RS11000 are separated by 15 nucleotidesABZR87_RS11000 and ABZR87_RS11005 are separated by 149 nucleotidesABZR87_RS11005 and ABZR87_RS11010 are separated by 145 nucleotides ABZR87_RS10990: ABZR87_RS10990 - 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB, at 2,328,344 to 2,329,096 _RS10990 ABZR87_RS10995: ABZR87_RS10995 - NAD-dependent deacylase, at 2,329,096 to 2,329,845 _RS10995 ABZR87_RS11000: ABZR87_RS11000 - transaldolase, at 2,329,861 to 2,330,820 _RS11000 ABZR87_RS11005: ABZR87_RS11005 - ribose-5-phosphate isomerase RpiA, at 2,330,970 to 2,331,656 _RS11005 ABZR87_RS11010: ABZR87_RS11010 - oxidative damage protection protein, at 2,331,802 to 2,332,077 _RS11010
Group Condition ABZR87_RS10990 ABZR87_RS10995 ABZR87_RS11000 ABZR87_RS11005 ABZR87_RS11010
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB -1.4 -0.0 -2.0 N.D. -4.4
carbon source Octanoic (C) -3.7 -1.8 +0.2 N.D. -2.3
carbon source Octanoic (C) -1.0 -2.4 +0.7 N.D. -4.2
soil soil EcoFAB sample 1; outgrowth in LB -0.6 -0.2 -1.8 N.D. -4.1
carbon source Heptanoic (C) -1.3 -1.8 +0.5 N.D. -3.7
soil soil EcoFAB sample 2; outgrowth in LB -0.8 +0.0 -0.5 N.D. -4.4
rhizosphere rhizosphere EcoFAB sample 2; outgrowth in LB -0.9 +0.1 -0.9 N.D. -3.4
carbon source Heptanoic (C) -0.9 -1.6 +0.4 N.D. -2.8
no_plant_rhizosphere no_plant_rhizosphere sample 1; outgrowth in LB -0.5 -0.3 -1.0 N.D. -2.6
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -1.2 -0.0 -0.6 N.D. -2.1
carbon source Sebacic (C) -1.1 -1.8 +0.9 N.D. -1.7
no_plant_soil no_plant_soil sample 3; outgrowth in LB -0.1 -0.3 -1.4 N.D. -1.9
carbon source Protocatechuic Acid (C) -1.3 -0.3 -1.8 N.D. -0.0
nitrogen source nitrogen source nitrate 20mM -0.1 +0.1 -0.6 N.D. -2.7
soil soil sample 3; outgrowth in LB -0.5 +0.0 -0.1 N.D. -2.8
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB -0.3 -0.4 -1.1 N.D. -1.4
carbon source 4-Hydroxybenzoic Acid (C) -0.4 -0.3 -1.5 N.D. -1.1
no_plant_soil no_plant_soil sample 2; outgrowth in LB -0.6 +0.2 -0.6 N.D. -2.3
soil soil sample 9; outgrowth in LB -0.3 -0.1 -0.2 N.D. -2.5
soil soil sample 6; outgrowth in LB -0.8 +0.3 -0.1 N.D. -2.5
no_plant_soil no_plant_soil sample 1; outgrowth in LB -0.4 -0.1 -0.5 N.D. -2.1
nitrogen source nitrogen source nitrate 5mM -0.0 -0.1 -1.2 N.D. -1.6
nitrogen source nitrogen source nitrite 5mM -0.5 +0.0 -1.0 N.D. -1.4
nitrogen source nitrogen source nitrite 5mM -0.2 +0.1 -0.9 N.D. -1.7
carbon source Lauric (C) -1.8 -1.1 +0.7 N.D. -0.3
root root EcoFAB sample 2; outgrowth in LB -0.9 +0.1 -0.8 N.D. -1.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.8 +0.2 -0.0 N.D. -1.9
rhizosphere rhizosphere sample 3; outgrowth in LB -0.5 +0.3 -0.1 N.D. -2.1
carbon source Lauric (C) +0.1 -0.1 -0.3 N.D. -2.2
carbon source succinate (C) +0.2 -0.1 +0.0 N.D. -2.5
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