Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS10880 and ABZR87_RS10885 are separated by 160 nucleotidesABZR87_RS10885 and ABZR87_RS10890 are separated by 96 nucleotidesABZR87_RS10890 and ABZR87_RS10895 are separated by 367 nucleotidesABZR87_RS10895 and ABZR87_RS10900 are separated by 42 nucleotides ABZR87_RS10880: ABZR87_RS10880 - endonuclease/exonuclease/phosphatase family protein, at 2,304,055 to 2,304,918 _RS10880 ABZR87_RS10885: ABZR87_RS10885 - 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD, at 2,305,079 to 2,306,431 _RS10885 ABZR87_RS10890: ABZR87_RS10890 - Bax inhibitor-1/YccA family protein, at 2,306,528 to 2,307,229 _RS10890 ABZR87_RS10895: ABZR87_RS10895 - nucleoside-diphosphate kinase, at 2,307,597 to 2,308,022 _RS10895 ABZR87_RS10900: ABZR87_RS10900 - 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN, at 2,308,065 to 2,309,216 _RS10900
Group Condition ABZR87_RS10880 ABZR87_RS10885 ABZR87_RS10890 ABZR87_RS10895 ABZR87_RS10900
root root sample 5; outgrowth in LB -0.2 -0.1 +0.1 N.D. -2.5
rhizosphere rhizosphere sample 6; outgrowth in LB +0.0 -0.3 -0.0 N.D. -2.0
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB +0.1 -0.2 +0.2 N.D. -2.3
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB -0.3 -0.2 +0.1 N.D. -1.3
carbon source Lauric (C) +0.0 +0.2 -0.0 N.D. -1.9
soil soil EcoFAB sample 1; outgrowth in LB +0.3 +0.0 -0.2 N.D. -1.7
soil soil EcoFAB sample 2; outgrowth in LB -0.1 -0.2 +0.0 N.D. -1.3
soil soil sample 1; outgrowth in LB +0.0 -0.1 +0.0 N.D. -1.5
rhizosphere rhizosphere EcoFAB sample 2; outgrowth in LB -0.2 -0.2 +0.1 N.D. -1.3
rhizosphere rhizosphere sample 7; outgrowth in LB -0.1 -0.1 +0.1 N.D. -1.4
carbon source D-Xylose (C) -0.3 -0.3 -0.2 N.D. -0.5
soil soil sample 7; outgrowth in LB -0.0 +0.0 -0.1 N.D. -1.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.1 -0.0 +0.2 N.D. -1.4
root root sample 6; outgrowth in LB +0.3 -0.5 +0.2 N.D. -1.3
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB -0.0 +0.1 +0.0 N.D. -1.3
rhizosphere rhizosphere sample 8; outgrowth in LB +0.0 +0.1 +0.1 N.D. -1.4
soil soil sample 2; outgrowth in LB +0.1 +0.0 -0.1 N.D. -1.3
root root EcoFAB sample 1; outgrowth in LB +0.1 -0.3 +0.1 N.D. -1.1
rhizosphere rhizosphere sample 2; outgrowth in LB -0.0 -0.2 +0.2 N.D. -1.1
carbon source Octanoic (C) -0.1 +0.4 -0.1 N.D. -1.2
root root sample 4; outgrowth in LB +0.1 +0.1 +0.3 N.D. -1.2
soil soil sample 5; outgrowth in LB +0.1 +0.1 +0.2 N.D. -1.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.3 +0.4 +0.2 N.D. -1.5
no_plant_soil no_plant_soil sample 3; outgrowth in LB +0.3 +0.1 +0.2 N.D. -0.9
carbon source Octanoic (C) -0.1 +0.5 +0.2 N.D. -0.7
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.0 +0.5 +0.3 N.D. -0.6
carbon source Sebacic (C) +0.2 -0.1 -0.2 N.D. +1.0
phage Ra3_0.1 -0.0 +0.3 -0.0 N.D. +1.3
phage Ra1_0.1 +0.1 +0.3 -0.2 N.D. +2.9
phage Ra3_1 +0.2 +0.2 -0.1 N.D. +2.9
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ABZR87_RS10880
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