Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS10875 and ABZR87_RS10880 are separated by 37 nucleotidesABZR87_RS10880 and ABZR87_RS10885 are separated by 160 nucleotidesABZR87_RS10885 and ABZR87_RS10890 are separated by 96 nucleotidesABZR87_RS10890 and ABZR87_RS10895 are separated by 367 nucleotides ABZR87_RS10875: ABZR87_RS10875 - RNA polymerase sigma factor RpoS, at 2,302,881 to 2,304,017 _RS10875 ABZR87_RS10880: ABZR87_RS10880 - endonuclease/exonuclease/phosphatase family protein, at 2,304,055 to 2,304,918 _RS10880 ABZR87_RS10885: ABZR87_RS10885 - 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD, at 2,305,079 to 2,306,431 _RS10885 ABZR87_RS10890: ABZR87_RS10890 - Bax inhibitor-1/YccA family protein, at 2,306,528 to 2,307,229 _RS10890 ABZR87_RS10895: ABZR87_RS10895 - nucleoside-diphosphate kinase, at 2,307,597 to 2,308,022 _RS10895
Group Condition ABZR87_RS10875 ABZR87_RS10880 ABZR87_RS10885 ABZR87_RS10890 ABZR87_RS10895
carbon source Octanoic (C) -2.1 -0.1 +0.4 -0.1 N.D.
carbon source Heptanoic (C) -1.6 -0.1 +0.1 -0.1 N.D.
carbon source Octanoic (C) -2.2 -0.1 +0.5 +0.2 N.D.
carbon source Heptanoic (C) -1.5 +0.0 +0.2 -0.1 N.D.
root root sample 6; outgrowth in LB +0.8 +0.3 -0.5 +0.2 N.D.
carbon source Protocatechuic Acid (C) +1.5 +0.0 -0.0 -0.2 N.D.
rhizosphere rhizosphere sample 1; outgrowth in LB +1.4 +0.2 -0.1 +0.1 N.D.
soil soil EcoFAB sample 2; outgrowth in LB +1.9 -0.1 -0.2 +0.0 N.D.
rhizosphere rhizosphere EcoFAB sample 2; outgrowth in LB +1.8 -0.2 -0.2 +0.1 N.D.
root root EcoFAB sample 2; outgrowth in LB +1.8 -0.1 -0.0 +0.0 N.D.
no_plant_soil no_plant_soil sample 1; outgrowth in LB +1.8 -0.2 -0.0 +0.1 N.D.
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +1.0 -0.2 +0.6 +0.2 N.D.
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB +2.2 -0.3 -0.2 +0.1 N.D.
carbon source butyrate (C) +2.0 -0.0 -0.2 +0.1 N.D.
rhizosphere rhizosphere sample 9; outgrowth in LB +1.7 +0.2 -0.2 +0.2 N.D.
carbon source butyrate (C) +2.0 -0.0 +0.1 -0.1 N.D.
root root EcoFAB sample 1; outgrowth in LB +2.1 +0.1 -0.3 +0.1 N.D.
carbon source Pimelic (C) +2.3 -0.1 -0.0 -0.1 N.D.
carbon source Pimelic (C) +2.4 -0.1 -0.1 -0.0 N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +1.2 +0.3 +0.4 +0.2 N.D.
soil soil EcoFAB sample 1; outgrowth in LB +3.3 +0.3 +0.0 -0.2 N.D.
carbon source adipate (C) +3.8 -0.1 -0.2 +0.0 N.D.
carbon source adipate (C) +3.7 -0.0 -0.2 +0.2 N.D.
carbon source Disodium Glutarate (C) +4.3 -0.2 -0.0 -0.1 N.D.
no_plant_soil no_plant_soil sample 2; outgrowth in LB +3.9 +0.1 +0.0 +0.0 N.D.
carbon source Disodium Glutarate (C) +4.3 -0.1 +0.0 +0.1 N.D.
no_plant_soil no_plant_soil sample 3; outgrowth in LB +5.1 +0.3 +0.1 +0.2 N.D.
no_plant_rhizosphere no_plant_rhizosphere sample 1; outgrowth in LB +8.6 -0.0 -0.1 +0.3 N.D.
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB +9.1 +0.1 -0.2 +0.2 N.D.
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB +9.4 -0.0 +0.1 +0.0 N.D.
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