Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS10855 and ABZR87_RS10860 are separated by 211 nucleotidesABZR87_RS10860 and ABZR87_RS10865 are separated by 15 nucleotidesABZR87_RS10865 and ABZR87_RS10870 are separated by 1 nucleotidesABZR87_RS10870 and ABZR87_RS10875 are separated by 8 nucleotides ABZR87_RS10855: ABZR87_RS10855 - NADPH:quinone oxidoreductase family protein, at 2,299,142 to 2,300,116 _RS10855 ABZR87_RS10860: ABZR87_RS10860 - 5'/3'-nucleotidase SurE, at 2,300,328 to 2,301,083 _RS10860 ABZR87_RS10865: ABZR87_RS10865 - protein-L-isoaspartate(D-aspartate) O-methyltransferase, at 2,301,099 to 2,302,043 _RS10865 ABZR87_RS10870: ABZR87_RS10870 - peptidoglycan DD-metalloendopeptidase family protein, at 2,302,045 to 2,302,872 _RS10870 ABZR87_RS10875: ABZR87_RS10875 - RNA polymerase sigma factor RpoS, at 2,302,881 to 2,304,017 _RS10875
Group Condition ABZR87_RS10855 ABZR87_RS10860 ABZR87_RS10865 ABZR87_RS10870 ABZR87_RS10875
carbon source Octanoic (C) -0.5 N.D. -1.3 -4.0 -2.1
carbon source Lauric (C) -0.0 N.D. -1.6 -5.5 +0.7
carbon source Octanoic (C) +0.1 N.D. -0.9 -2.6 -2.2
carbon source Heptanoic (C) -0.0 N.D. -1.1 -2.2 -1.6
carbon source Heptanoic (C) -0.1 N.D. -1.2 -2.0 -1.5
carbon source Dodecandioic (C) +0.5 N.D. -0.7 -3.1 -0.3
carbon source Sebacic (C) +0.1 N.D. -0.7 -3.3 +0.2
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.5 N.D. -0.2 -2.9 +1.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.9 N.D. -0.8 -2.9 +1.2
root root sample 4; outgrowth in LB -0.1 N.D. -0.6 +2.6 +0.8
carbon source adipate (C) -0.3 N.D. -0.5 +0.1 +3.7
carbon source adipate (C) -0.1 N.D. -0.7 +0.1 +3.8
root root sample 6; outgrowth in LB +0.4 N.D. -0.6 +2.5 +0.8
rhizosphere rhizosphere sample 4; outgrowth in LB +0.1 N.D. -0.8 +3.1 +0.8
no_plant_soil no_plant_soil sample 2; outgrowth in LB +0.1 N.D. -0.3 -0.5 +3.9
root root EcoFAB sample 2; outgrowth in LB -0.0 N.D. -0.7 +2.6 +1.8
soil soil EcoFAB sample 1; outgrowth in LB -0.1 N.D. +0.2 +0.5 +3.3
rhizosphere rhizosphere sample 9; outgrowth in LB +0.0 N.D. -0.5 +2.6 +1.7
rhizosphere rhizosphere sample 6; outgrowth in LB +0.1 N.D. -0.7 +3.2 +1.3
rhizosphere rhizosphere sample 7; outgrowth in LB -0.1 N.D. -0.4 +3.5 +0.9
carbon source Disodium Glutarate (C) -0.0 N.D. -0.4 +0.3 +4.3
no_plant_soil no_plant_soil sample 3; outgrowth in LB +0.3 N.D. -0.9 -0.2 +5.1
carbon source Disodium Glutarate (C) -0.1 N.D. -0.4 +0.4 +4.3
rhizosphere rhizosphere sample 3; outgrowth in LB +0.2 N.D. -0.3 +3.3 +1.2
rhizosphere rhizosphere sample 1; outgrowth in LB +0.4 N.D. -0.5 +3.4 +1.4
rhizosphere rhizosphere sample 2; outgrowth in LB +0.3 N.D. -0.4 +3.4 +1.3
rhizosphere rhizosphere sample 8; outgrowth in LB +0.6 N.D. -0.3 +3.5 +0.9
no_plant_rhizosphere no_plant_rhizosphere sample 1; outgrowth in LB +0.3 N.D. -0.3 -0.1 +8.6
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB -0.0 N.D. -0.0 +1.3 +9.1
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB -0.1 N.D. +0.2 +1.1 +9.4
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