Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS10845 and ABZR87_RS10850 are separated by 98 nucleotidesABZR87_RS10850 and ABZR87_RS10855 are separated by 75 nucleotidesABZR87_RS10855 and ABZR87_RS10860 are separated by 211 nucleotidesABZR87_RS10860 and ABZR87_RS10865 are separated by 15 nucleotides ABZR87_RS10845: ABZR87_RS10845 - TetR/AcrR family transcriptional regulator, at 2,297,232 to 2,297,861 _RS10845 ABZR87_RS10850: ABZR87_RS10850 - alkene reductase, at 2,297,960 to 2,299,066 _RS10850 ABZR87_RS10855: ABZR87_RS10855 - NADPH:quinone oxidoreductase family protein, at 2,299,142 to 2,300,116 _RS10855 ABZR87_RS10860: ABZR87_RS10860 - 5'/3'-nucleotidase SurE, at 2,300,328 to 2,301,083 _RS10860 ABZR87_RS10865: ABZR87_RS10865 - protein-L-isoaspartate(D-aspartate) O-methyltransferase, at 2,301,099 to 2,302,043 _RS10865
Group Condition ABZR87_RS10845 ABZR87_RS10850 ABZR87_RS10855 ABZR87_RS10860 ABZR87_RS10865
carbon source Octanoic (C) -0.4 +0.0 -0.5 N.D. -1.3
carbon source Lauric (C) -0.5 +0.2 -0.0 N.D. -1.6
carbon source D-Xylose (C) -0.3 -0.3 -0.4 N.D. -0.7
carbon source Heptanoic (C) -0.4 +0.1 -0.1 N.D. -1.2
root root EcoFAB sample 2; outgrowth in LB -0.6 -0.1 -0.0 N.D. -0.7
carbon source Carbon source D-Glucose 10 mM -0.2 +0.0 -0.1 N.D. -1.0
carbon source adipate (C) -0.5 -0.0 -0.3 N.D. -0.5
carbon source Heptanoic (C) -0.2 +0.2 -0.0 N.D. -1.1
carbon source butyrate (C) -0.3 +0.0 -0.2 N.D. -0.7
carbon source Octanoic (C) -0.5 +0.2 +0.1 N.D. -0.9
soil soil sample 6; outgrowth in LB -0.3 +0.1 +0.1 N.D. -0.8
carbon source adipate (C) -0.3 +0.2 -0.1 N.D. -0.7
carbon source D-Glucose (C) -0.2 +0.2 -0.3 N.D. -0.6
carbon source Sebacic (C) -0.5 +0.2 +0.1 N.D. -0.7
nitrogen source nitrogen source Ammonium chloride 20mM +0.1 +0.1 +0.0 N.D. -1.1
carbon source Pimelic (C) -0.2 +0.2 -0.3 N.D. -0.5
root root sample 5; outgrowth in LB -0.5 -0.1 +0.4 N.D. -0.3
nitrogen source nitrogen source nitrate 20mM +0.3 +0.0 +0.1 N.D. -1.0
nitrogen source nitrogen source nitrate 5mM +0.1 +0.0 +0.2 N.D. -0.9
no_plant_soil no_plant_soil sample 3; outgrowth in LB -0.0 +0.2 +0.3 N.D. -0.9
carbon source Dodecandioic (C) -0.2 +0.1 +0.5 N.D. -0.7
root root EcoFAB sample 1; outgrowth in LB -0.3 +0.1 +0.6 N.D. -0.7
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.3 +0.3 -0.5 N.D. -0.4
rhizosphere rhizosphere sample 3; outgrowth in LB -0.4 +0.3 +0.2 N.D. -0.3
root root sample 6; outgrowth in LB -0.2 +0.5 +0.4 N.D. -0.6
soil soil sample 5; outgrowth in LB +0.2 +0.3 +0.3 N.D. -0.7
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.3 +0.3 +0.9 N.D. -0.8
root root sample 4; outgrowth in LB +0.9 +0.3 -0.1 N.D. -0.6
phage Ra3_1 -0.2 +0.3 +0.2 N.D. +0.6
nitrogen source nitrogen source nitrite 0.5mM +0.7 +0.0 +0.3 N.D. -0.2
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ABZR87_RS10845
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ABZR87_RS10850
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