Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS10775 and ABZR87_RS10780 are separated by 216 nucleotidesABZR87_RS10780 and ABZR87_RS10785 overlap by 4 nucleotidesABZR87_RS10785 and ABZR87_RS10795 are separated by 278 nucleotidesABZR87_RS10795 and ABZR87_RS10800 are separated by 85 nucleotides ABZR87_RS10775: ABZR87_RS10775 - thioredoxin TrxA, at 2,279,864 to 2,280,190 _RS10775 ABZR87_RS10780: ABZR87_RS10780 - PD-(D/E)XK nuclease family protein, at 2,280,407 to 2,283,250 _RS10780 ABZR87_RS10785: ABZR87_RS10785 - exodeoxyribonuclease V subunit beta, at 2,283,247 to 2,286,768 _RS10785 ABZR87_RS10795: ABZR87_RS10795 - DNA polymerase III subunit gamma/tau, at 2,287,047 to 2,289,251 _RS10795 ABZR87_RS10800: ABZR87_RS10800 - YbaB/EbfC family nucleoid-associated protein, at 2,289,337 to 2,289,684 _RS10800
Group Condition ABZR87_RS10775 ABZR87_RS10780 ABZR87_RS10785 ABZR87_RS10795 ABZR87_RS10800
carbon source Octanoic (C) N.D. -2.2 -2.3 N.D. -3.2
carbon source Heptanoic (C) N.D. -3.1 -2.0 N.D. -2.2
carbon source Octanoic (C) N.D. -1.7 -2.0 N.D. -3.1
carbon source Heptanoic (C) N.D. -2.7 -2.1 N.D. -1.9
nitrogen source nitrogen source Ammonium chloride 20mM N.D. -3.1 -2.8 N.D. -0.1
nitrogen source nitrogen source nitrate 20mM N.D. -3.5 -2.1 N.D. -0.4
nitrogen source nitrogen source nitrite 0.5mM N.D. -3.3 -1.8 N.D. -0.8
soil soil EcoFAB sample 1; outgrowth in LB N.D. -1.3 -0.7 N.D. -3.6
carbon source Protocatechuic Acid (C) N.D. -2.3 -2.4 N.D. -0.8
carbon source Lauric (C) N.D. -0.8 -1.3 N.D. -3.3
nitrogen source nitrogen source nitrite 5mM N.D. -2.1 -2.4 N.D. -0.8
carbon source Glycerol (C) N.D. -2.7 -2.3 N.D. -0.2
no_plant_soil no_plant_soil sample 2; outgrowth in LB N.D. -1.9 -2.2 N.D. -0.9
nitrogen source nitrogen source nitrite 0.5mM N.D. -1.3 -1.8 N.D. -1.7
soil soil sample 8; outgrowth in LB N.D. -2.0 -2.3 N.D. -0.5
nitrogen source nitrogen source nitrite 5mM N.D. -2.4 -2.3 N.D. -0.1
carbon source Protocatechuic Acid (C) N.D. -2.5 -2.1 N.D. -0.2
carbon source D-Glucose (C) N.D. -1.4 -2.3 N.D. -0.9
carbon source propionate (C) N.D. -1.7 -2.2 N.D. -0.6
carbon source Sebacic (C) N.D. -2.2 -2.8 N.D. +0.4
carbon source D-Xylose (C) N.D. -2.0 -2.2 N.D. -0.3
soil soil sample 9; outgrowth in LB N.D. -1.5 -1.7 N.D. -1.3
soil soil sample 6; outgrowth in LB N.D. -1.6 -2.0 N.D. -0.6
carbon source Protocatechuic Acid (C) N.D. -1.7 -2.7 N.D. +0.2
carbon source Beta-alanine (C) N.D. -1.9 -1.9 N.D. -0.3
carbon source 4-Hydroxybenzoic Acid (C) N.D. -2.2 -2.5 N.D. +1.0
carbon source Pimelic (C) N.D. -2.8 -1.2 N.D. +0.3
carbon source Dodecandioic (C) N.D. -2.5 -1.8 N.D. +0.9
nitrogen source nitrogen source nitrate 5mM N.D. -1.5 -2.2 N.D. +0.8
rhizosphere rhizosphere sample 3; outgrowth in LB N.D. +0.8 +0.8 N.D. +3.6
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