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Protein
Homologs
Fitness for 5 genes in
Ralstonia sp. UNC404CL21Col
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABZR87_RS10680 and ABZR87_RS10685 are separated by 16 nucleotides
ABZR87_RS10685 and ABZR87_RS10690 are separated by 14 nucleotides
ABZR87_RS10690 and ABZR87_RS10695 overlap by 4 nucleotides
ABZR87_RS10695 and ABZR87_RS10700 are separated by 241 nucleotides
ABZR87_RS10680: ABZR87_RS10680 - extracellular solute-binding protein, at 2,259,754 to 2,261,640
_RS10680
ABZR87_RS10685: ABZR87_RS10685 - microcin C ABC transporter permease YejB, at 2,261,657 to 2,262,709
_RS10685
ABZR87_RS10690: ABZR87_RS10690 - ABC transporter permease, at 2,262,724 to 2,263,848
_RS10690
ABZR87_RS10695: ABZR87_RS10695 - ABC transporter ATP-binding protein, at 2,263,845 to 2,265,500
_RS10695
ABZR87_RS10700: ABZR87_RS10700 - C40 family peptidase, at 2,265,742 to 2,266,389
_RS10700
Group
Condition
ABZR87
_RS10680
ABZR87
_RS10685
ABZR87
_RS10690
ABZR87
_RS10695
ABZR87
_RS10700
carbon source
Lauric (C)
-0.4
-0.5
-0.6
-0.3
-6.3
soil
soil EcoFAB sample 1; outgrowth in LB
-1.9
-0.7
-1.7
-1.9
-0.8
no_plant_rhizosphere
no_plant_rhizosphere sample 3; outgrowth in LB
-1.2
-1.7
-1.1
-1.2
-1.3
rhizosphere
rhizosphere EcoFAB sample 1; outgrowth in LB
-0.8
-1.5
-1.8
-1.4
-0.5
root
root sample 6; outgrowth in LB
-0.9
-0.6
-0.9
-1.3
-1.5
in planta
Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
-0.9
-1.0
-1.2
-0.6
-1.4
in planta
Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
-1.1
-0.5
-1.0
-0.8
-1.5
no_plant_rhizosphere
no_plant_rhizosphere sample 2; outgrowth in LB
-0.8
-1.0
-0.8
-1.1
-1.0
soil
soil EcoFAB sample 2; outgrowth in LB
-1.2
-1.0
-0.6
-1.1
-0.8
root
root EcoFAB sample 1; outgrowth in LB
-1.0
-1.0
-0.7
-1.1
-0.6
in planta
Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
-0.9
-1.1
-0.7
-0.8
-0.9
in planta
Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
-0.5
-0.9
-0.9
-0.8
-1.2
root
root sample 5; outgrowth in LB
-0.7
-1.0
-1.1
-0.5
-0.9
in planta
Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
-0.9
-0.9
-0.5
-0.7
-1.1
root
root EcoFAB sample 2; outgrowth in LB
-1.1
-0.8
-0.5
-0.6
-1.0
rhizosphere
rhizosphere sample 8; outgrowth in LB
-0.4
-0.7
-0.9
-0.3
-1.3
in planta
Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
-1.0
-0.4
-0.4
-0.4
-1.4
rhizosphere
rhizosphere EcoFAB sample 2; outgrowth in LB
-0.8
-0.8
-0.8
-0.8
-0.3
root
root sample 4; outgrowth in LB
-0.3
-0.6
-0.5
-0.8
-1.1
carbon source
Trans-2-methyl-2-butenoic (C)
-0.9
-0.7
-1.0
-0.6
+0.2
carbon source
Octanoic (C)
+1.1
+1.2
+1.0
+1.2
-3.3
carbon source
Octanoic (C)
+1.4
+1.2
+1.3
+1.4
-3.2
carbon source
Sebacic (C)
+1.0
+0.9
+1.1
+1.3
+1.3
carbon source
Hexanoic (C)
+1.7
+1.9
+1.6
+1.9
+0.2
carbon source
Hexanoic (C)
+1.8
+1.8
+1.7
+1.9
+0.3
carbon source
4-Hydroxybenzoic Acid (C)
+2.2
+2.3
+1.9
+2.5
+2.8
carbon source
Heptanoic (C)
+3.7
+4.0
+3.8
+4.0
+1.5
carbon source
Heptanoic (C)
+4.1
+4.3
+4.1
+4.4
+1.4
carbon source
Dodecandioic (C)
+4.8
+5.0
+4.9
+5.1
+2.0
carbon source
Dodecandioic (C)
+4.9
+5.0
+5.0
+5.2
+2.0
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