Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS10565 and ABZR87_RS10570 are separated by 11 nucleotidesABZR87_RS10570 and ABZR87_RS10575 are separated by 47 nucleotidesABZR87_RS10575 and ABZR87_RS10580 are separated by 5 nucleotidesABZR87_RS10580 and ABZR87_RS10585 are separated by 97 nucleotides ABZR87_RS10565: ABZR87_RS10565 - cupin domain-containing protein, at 2,234,388 to 2,235,617 _RS10565 ABZR87_RS10570: ABZR87_RS10570 - peptidylprolyl isomerase, at 2,235,629 to 2,236,156 _RS10570 ABZR87_RS10575: ABZR87_RS10575 - metallophosphoesterase, at 2,236,204 to 2,237,280 _RS10575 ABZR87_RS10580: ABZR87_RS10580 - DNA mismatch repair protein MutS, at 2,237,286 to 2,239,928 _RS10580 ABZR87_RS10585: ABZR87_RS10585 - LysR family transcriptional regulator, at 2,240,026 to 2,240,922 _RS10585
Group Condition ABZR87_RS10565 ABZR87_RS10570 ABZR87_RS10575 ABZR87_RS10580 ABZR87_RS10585
carbon source Sebacic (C) -3.1 -1.1 -0.1 -0.3 -1.4
carbon source Octanoic (C) -3.3 -1.8 -0.4 +0.1 -0.1
carbon source Octanoic (C) -3.1 -1.9 -0.4 +0.3 -0.2
carbon source propionate (C) -4.2 -0.5 -0.3 +0.1 -0.0
carbon source Heptanoic (C) -4.3 -0.9 -0.2 +0.0 +0.4
carbon source Heptanoic (C) -3.9 -0.9 -0.3 +0.1 +0.1
carbon source Azelaic (C) -4.1 -0.4 -0.2 -0.3 +0.1
carbon source Dodecandioic (C) -3.6 -0.7 -0.1 -0.0 -0.1
carbon source Sebacic (C) -4.3 -0.2 -0.0 -0.2 +0.2
carbon source Dodecandioic (C) -3.5 -0.9 -0.1 -0.2 +0.1
carbon source Pimelic (C) -2.7 -1.1 -0.1 -0.3 -0.2
carbon source propionate (C) -3.8 -0.6 -0.1 -0.0 +0.2
carbon source Lauric (C) -4.1 -0.3 +0.0 +0.0 +0.4
carbon source Hexanoic (C) -3.5 -0.1 -0.1 -0.1 +0.0
carbon source adipate (C) -2.8 -0.9 -0.1 +0.1 +0.4
carbon source Protocatechuic Acid (C) -2.7 -0.3 -0.2 +0.0 -0.2
carbon source Valeric (C) -2.9 -0.3 -0.1 -0.1 +0.2
carbon source butyrate (C) -3.2 +0.1 -0.0 -0.2 +0.1
carbon source Pimelic (C) -2.4 -0.9 -0.2 -0.1 +0.4
carbon source Hexanoic (C) -2.8 -0.1 -0.1 +0.1 -0.2
carbon source adipate (C) -1.9 -0.8 -0.2 -0.2 +0.1
carbon source Suberic (C) -2.8 -0.2 -0.1 +0.0 +0.2
carbon source Valeric (C) -2.8 +0.1 -0.0 +0.1 -0.1
carbon source acetate (C) -2.9 -0.2 +0.1 +0.1 +0.4
phage Ra3_1 -1.7 +0.5 -0.1 +0.8 -0.0
soil soil sample 6; outgrowth in LB -1.9 +0.4 +0.2 +0.4 +0.3
no_plant_soil no_plant_soil sample 1; outgrowth in LB -1.6 -0.2 +0.2 +0.4 +1.0
root root sample 6; outgrowth in LB +1.5 +0.1 +0.1 +0.6 +0.8
root root sample 4; outgrowth in LB +1.2 +0.3 +0.3 +0.6 +0.9
rhizosphere rhizosphere sample 9; outgrowth in LB +1.3 -0.0 +0.1 +1.1 +1.3
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