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Cofit
Protein
Homologs
Fitness for 5 genes in
Ralstonia sp. UNC404CL21Col
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABZR87_RS10560 and ABZR87_RS10565 are separated by 239 nucleotides
ABZR87_RS10565 and ABZR87_RS10570 are separated by 11 nucleotides
ABZR87_RS10570 and ABZR87_RS10575 are separated by 47 nucleotides
ABZR87_RS10575 and ABZR87_RS10580 are separated by 5 nucleotides
ABZR87_RS10560: ABZR87_RS10560 - hypothetical protein, at 2,233,906 to 2,234,148
_RS10560
ABZR87_RS10565: ABZR87_RS10565 - cupin domain-containing protein, at 2,234,388 to 2,235,617
_RS10565
ABZR87_RS10570: ABZR87_RS10570 - peptidylprolyl isomerase, at 2,235,629 to 2,236,156
_RS10570
ABZR87_RS10575: ABZR87_RS10575 - metallophosphoesterase, at 2,236,204 to 2,237,280
_RS10575
ABZR87_RS10580: ABZR87_RS10580 - DNA mismatch repair protein MutS, at 2,237,286 to 2,239,928
_RS10580
Group
Condition
ABZR87
_RS10560
ABZR87
_RS10565
ABZR87
_RS10570
ABZR87
_RS10575
ABZR87
_RS10580
carbon source
Octanoic (C)
N.D.
-3.3
-1.8
-0.4
+0.1
carbon source
Heptanoic (C)
N.D.
-4.3
-0.9
-0.2
+0.0
carbon source
Octanoic (C)
N.D.
-3.1
-1.9
-0.4
+0.3
carbon source
Heptanoic (C)
N.D.
-3.9
-0.9
-0.3
+0.1
carbon source
Azelaic (C)
N.D.
-4.1
-0.4
-0.2
-0.3
carbon source
propionate (C)
N.D.
-4.2
-0.5
-0.3
+0.1
carbon source
Sebacic (C)
N.D.
-4.3
-0.2
-0.0
-0.2
carbon source
Dodecandioic (C)
N.D.
-3.5
-0.9
-0.1
-0.2
carbon source
Sebacic (C)
N.D.
-3.1
-1.1
-0.1
-0.3
carbon source
propionate (C)
N.D.
-3.8
-0.6
-0.1
-0.0
carbon source
Dodecandioic (C)
N.D.
-3.6
-0.7
-0.1
-0.0
carbon source
Lauric (C)
N.D.
-4.1
-0.3
+0.0
+0.0
carbon source
Pimelic (C)
N.D.
-2.7
-1.1
-0.1
-0.3
carbon source
adipate (C)
N.D.
-2.8
-0.9
-0.1
+0.1
carbon source
Hexanoic (C)
N.D.
-3.5
-0.1
-0.1
-0.1
carbon source
Pimelic (C)
N.D.
-2.4
-0.9
-0.2
-0.1
carbon source
Valeric (C)
N.D.
-2.9
-0.3
-0.1
-0.1
carbon source
butyrate (C)
N.D.
-3.2
+0.1
-0.0
-0.2
carbon source
adipate (C)
N.D.
-1.9
-0.8
-0.2
-0.2
carbon source
Suberic (C)
N.D.
-2.8
-0.2
-0.1
+0.0
carbon source
Protocatechuic Acid (C)
N.D.
-2.7
-0.3
-0.2
+0.0
carbon source
acetate (C)
N.D.
-2.9
-0.2
+0.1
+0.1
carbon source
butyrate (C)
N.D.
-2.6
-0.1
-0.1
-0.2
carbon source
Hexanoic (C)
N.D.
-2.8
-0.1
-0.1
+0.1
carbon source
acetate (C)
N.D.
-2.5
+0.0
-0.2
-0.1
carbon source
Valeric (C)
N.D.
-2.8
+0.1
-0.0
+0.1
soil
soil sample 6; outgrowth in LB
N.D.
-1.9
+0.4
+0.2
+0.4
soil
soil sample 7; outgrowth in LB
N.D.
-1.6
+0.3
+0.4
+0.4
phage
Ra3_1
N.D.
-1.7
+0.5
-0.1
+0.8
phage
Ra1_0.1
N.D.
-1.5
+0.3
-0.0
+0.8
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