Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 129 experiments or choose conditions or try the comparative fitness browser

500 ntABZR87_RS10525 and ABZR87_RS10530 are separated by 66 nucleotidesABZR87_RS10530 and ABZR87_RS10535 are separated by 21 nucleotidesABZR87_RS10535 and ABZR87_RS10540 are separated by 10 nucleotidesABZR87_RS10540 and ABZR87_RS10545 are separated by 118 nucleotides ABZR87_RS10525: ABZR87_RS10525 - L-threonylcarbamoyladenylate synthase, at 2,227,516 to 2,228,139 _RS10525 ABZR87_RS10530: ABZR87_RS10530 - site-2 protease family protein, at 2,228,206 to 2,228,871 _RS10530 ABZR87_RS10535: ABZR87_RS10535 - tryptophan--tRNA ligase, at 2,228,893 to 2,230,095 _RS10535 ABZR87_RS10540: ABZR87_RS10540 - class I SAM-dependent methyltransferase, at 2,230,106 to 2,230,672 _RS10540 ABZR87_RS10545: ABZR87_RS10545 - 4-hydroxy-tetrahydrodipicolinate synthase, at 2,230,791 to 2,231,675 _RS10545
Group Condition ABZR87_RS10525 ABZR87_RS10530 ABZR87_RS10535 ABZR87_RS10540 ABZR87_RS10545
nitrogen source nitrogen source nitrite 0.5mM -1.7 -0.5 N.D. +0.1 N.D.
phage Ra3_1 -1.6 -0.0 N.D. -0.5 N.D.
phage Ra3_0.01 -1.9 -0.0 N.D. -0.0 N.D.
carbon source 4-Hydroxybenzoic Acid (C) -0.3 -1.0 N.D. -0.3 N.D.
carbon source Valeric (C) -1.2 -0.0 N.D. -0.3 N.D.
root root sample 5; outgrowth in LB -0.9 -0.1 N.D. -0.6 N.D.
carbon source adipate (C) -1.5 +0.0 N.D. +0.1 N.D.
rhizosphere rhizosphere sample 5; outgrowth in LB -1.2 +0.0 N.D. -0.1 N.D.
rhizosphere rhizosphere sample 8; outgrowth in LB -1.2 +0.0 N.D. -0.2 N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -1.5 +0.2 N.D. -0.0 N.D.
carbon source D-Galactose (C) -1.0 -0.2 N.D. -0.1 N.D.
phage Ra1_0.1 -0.8 -0.2 N.D. -0.3 N.D.
carbon source butyrate (C) -1.3 +0.2 N.D. -0.1 N.D.
nitrogen source nitrogen source Ammonium chloride 20mM -1.0 +0.1 N.D. -0.2 N.D.
carbon source Beta-alanine (C) -1.1 +0.1 N.D. +0.1 N.D.
carbon source Heptanoic (C) -1.1 +0.3 N.D. +0.0 N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -1.0 +0.2 N.D. +0.4 N.D.
nitrogen source nitrogen source nitrite 1mM -0.8 +0.4 N.D. +0.1 N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.7 +0.8 N.D. -0.0 N.D.
root root sample 4; outgrowth in LB -0.9 +0.3 N.D. +0.8 N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.7 +0.4 N.D. +0.5 N.D.
carbon source Azelaic (C) +0.9 +0.1 N.D. -0.4 N.D.
micoeukaryotes Acanthamoeba sp., muxed culture-2 +1.2 -0.1 N.D. +0.0 N.D.
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB +0.6 +0.3 N.D. +0.3 N.D.
rhizosphere rhizosphere sample 2; outgrowth in LB +1.0 +0.6 N.D. -0.2 N.D.
soil soil EcoFAB sample 1; outgrowth in LB +1.6 +0.2 N.D. -0.2 N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.9 +0.6 N.D. +0.1 N.D.
no_plant_rhizosphere no_plant_rhizosphere sample 1; outgrowth in LB +0.9 +0.5 N.D. +0.2 N.D.
root root sample 6; outgrowth in LB +2.0 -0.0 N.D. -0.1 N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +2.1 +0.4 N.D. -0.1 N.D.
remove
ABZR87_RS10525
plot		 remove
ABZR87_RS10530
plot		 remove
ABZR87_RS10535		 remove
ABZR87_RS10540
plot		 remove
ABZR87_RS10545
plot