Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS10410 and ABZR87_RS10415 are separated by 20 nucleotidesABZR87_RS10415 and ABZR87_RS10420 are separated by 98 nucleotidesABZR87_RS10420 and ABZR87_RS10425 are separated by 9 nucleotidesABZR87_RS10425 and ABZR87_RS10430 are separated by 105 nucleotides ABZR87_RS10410: ABZR87_RS10410 - lipoprotein-releasing ABC transporter ATP-binding protein LolD, at 2,205,758 to 2,206,486 _RS10410 ABZR87_RS10415: ABZR87_RS10415 - DUF2845 domain-containing protein, at 2,206,507 to 2,206,812 _RS10415 ABZR87_RS10420: ABZR87_RS10420 - TatD family hydrolase, at 2,206,911 to 2,207,723 _RS10420 ABZR87_RS10425: ABZR87_RS10425 - DNA internalization-related competence protein ComEC/Rec2, at 2,207,733 to 2,210,255 _RS10425 ABZR87_RS10430: ABZR87_RS10430 - circularly permuted type 2 ATP-grasp protein, at 2,210,361 to 2,211,845 _RS10430
Group Condition ABZR87_RS10410 ABZR87_RS10415 ABZR87_RS10420 ABZR87_RS10425 ABZR87_RS10430
carbon source Octanoic (C) N.D. -0.1 -1.1 -0.0 -1.5
rhizosphere rhizosphere sample 9; outgrowth in LB N.D. -0.2 -1.3 -0.2 -0.2
rhizosphere rhizosphere sample 3; outgrowth in LB N.D. +0.2 +0.3 -1.6 -0.2
soil soil EcoFAB sample 2; outgrowth in LB N.D. -0.0 -1.1 +0.2 -0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. +0.1 -0.9 -0.4 -0.0
carbon source Octanoic (C) N.D. -0.6 +0.4 +0.2 -1.1
carbon source Sebacic (C) N.D. -0.2 -0.9 -0.2 +0.5
root root sample 5; outgrowth in LB N.D. +0.0 -0.7 -0.0 -0.1
rhizosphere rhizosphere sample 8; outgrowth in LB N.D. -0.3 -1.0 +0.4 +0.1
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB N.D. +0.3 -1.7 +0.7 -0.1
carbon source butyrate (C) N.D. -0.3 -0.2 +0.1 -0.4
carbon source Protocatechuic Acid (C) N.D. +0.2 -0.5 -0.1 -0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. +0.2 -0.5 -0.3 -0.0
carbon source Heptanoic (C) N.D. +0.1 -0.4 +0.3 -0.6
soil soil EcoFAB sample 1; outgrowth in LB N.D. -0.3 -0.8 +0.6 +0.0
root root EcoFAB sample 1; outgrowth in LB N.D. -0.3 -0.6 +0.4 +0.1
rhizosphere rhizosphere sample 7; outgrowth in LB N.D. +0.1 -0.7 +0.1 +0.1
root root sample 6; outgrowth in LB N.D. +0.6 -0.4 -0.2 -0.1
carbon source Hexanoic (C) N.D. +0.2 -0.5 +0.3 -0.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -0.1 -0.5 +0.5 -0.0
carbon source Azelaic (C) N.D. +0.2 +0.2 +0.2 -0.5
soil soil sample 6; outgrowth in LB N.D. +0.0 -0.5 +0.5 +0.0
soil soil sample 9; outgrowth in LB N.D. -0.0 -0.4 +0.5 +0.0
no_plant_rhizosphere no_plant_rhizosphere sample 1; outgrowth in LB N.D. +0.1 -0.3 +0.5 -0.1
rhizosphere rhizosphere sample 1; outgrowth in LB N.D. -0.2 +0.5 +0.2 -0.1
rhizosphere rhizosphere sample 2; outgrowth in LB N.D. -0.4 +0.3 +0.6 -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. +0.3 -0.3 +0.5 +0.1
soil soil sample 4; outgrowth in LB N.D. -0.1 +0.3 +0.8 -0.0
carbon source L-Glutamic (C) N.D. +0.2 -0.2 +1.4 +0.0
root root sample 4; outgrowth in LB N.D. +0.4 +0.9 +0.6 +0.0
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