Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS10395 and ABZR87_RS10400 are separated by 22 nucleotidesABZR87_RS10400 and ABZR87_RS10405 are separated by 71 nucleotidesABZR87_RS10405 and ABZR87_RS10410 overlap by 8 nucleotidesABZR87_RS10410 and ABZR87_RS10415 are separated by 20 nucleotides ABZR87_RS10395: ABZR87_RS10395 - single-stranded-DNA-specific exonuclease RecJ, at 2,201,635 to 2,203,329 _RS10395 ABZR87_RS10400: ABZR87_RS10400 - hypothetical protein, at 2,203,352 to 2,204,443 _RS10400 ABZR87_RS10405: ABZR87_RS10405 - lipoprotein-releasing ABC transporter permease subunit, at 2,204,515 to 2,205,765 _RS10405 ABZR87_RS10410: ABZR87_RS10410 - lipoprotein-releasing ABC transporter ATP-binding protein LolD, at 2,205,758 to 2,206,486 _RS10410 ABZR87_RS10415: ABZR87_RS10415 - DUF2845 domain-containing protein, at 2,206,507 to 2,206,812 _RS10415
Group Condition ABZR87_RS10395 ABZR87_RS10400 ABZR87_RS10405 ABZR87_RS10410 ABZR87_RS10415
carbon source Octanoic (C) -1.9 -3.2 N.D. N.D. -0.6
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB -3.4 -2.1 N.D. N.D. +0.3
soil soil EcoFAB sample 1; outgrowth in LB -2.9 -1.8 N.D. N.D. -0.3
carbon source Octanoic (C) -1.1 -3.5 N.D. N.D. -0.1
carbon source Heptanoic (C) -1.4 -2.7 N.D. N.D. -0.0
soil soil sample 5; outgrowth in LB -1.4 -2.4 N.D. N.D. -0.4
carbon source Heptanoic (C) -1.1 -3.0 N.D. N.D. +0.1
root root EcoFAB sample 1; outgrowth in LB -1.7 -1.8 N.D. N.D. -0.3
soil soil sample 6; outgrowth in LB -2.5 -1.4 N.D. N.D. +0.0
carbon source propionate (C) -0.3 -3.3 N.D. N.D. +0.0
soil soil sample 3; outgrowth in LB -1.2 -2.2 N.D. N.D. -0.1
soil soil EcoFAB sample 2; outgrowth in LB -1.2 -2.1 N.D. N.D. -0.0
carbon source Sebacic (C) -0.7 -2.3 N.D. N.D. -0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -1.1 -1.7 N.D. N.D. -0.5
carbon source D-Glucose (C) -0.5 -2.7 N.D. N.D. +0.1
rhizosphere rhizosphere EcoFAB sample 2; outgrowth in LB -1.2 -1.6 N.D. N.D. -0.3
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB -2.3 -0.8 N.D. N.D. +0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -1.5 -1.4 N.D. N.D. +0.0
soil soil sample 1; outgrowth in LB -1.0 -1.9 N.D. N.D. -0.0
carbon source Trans-2-methyl-2-butenoic (C) -0.4 -2.7 N.D. N.D. +0.1
carbon source Hexanoic (C) -0.6 -2.4 N.D. N.D. +0.2
carbon source Trans-2-methyl-2-butenoic (C) -0.1 -2.8 N.D. N.D. +0.1
carbon source Valeric (C) -0.4 -2.4 N.D. N.D. -0.1
carbon source Hexanoic (C) -0.8 -2.1 N.D. N.D. +0.0
soil soil sample 9; outgrowth in LB -1.2 -1.5 N.D. N.D. -0.0
no_plant_soil no_plant_soil sample 2; outgrowth in LB -1.3 -1.3 N.D. N.D. +0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -1.7 -0.8 N.D. N.D. +0.3
rhizosphere rhizosphere sample 3; outgrowth in LB -2.1 +0.3 N.D. N.D. +0.2
phage Ra1_0.1 -1.4 +2.1 N.D. N.D. -0.1
phage Ra3_1 -0.8 +2.3 N.D. N.D. -0.1
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