Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS10375 and ABZR87_RS10380 are separated by 40 nucleotidesABZR87_RS10380 and ABZR87_RS10385 are separated by 80 nucleotidesABZR87_RS10385 and ABZR87_RS10390 are separated by 109 nucleotidesABZR87_RS10390 and ABZR87_RS10395 are separated by 178 nucleotides ABZR87_RS10375: ABZR87_RS10375 - thioredoxin family protein, at 2,199,996 to 2,200,730 _RS10375 ABZR87_RS10380: ABZR87_RS10380 - tRNA-Leu, at 2,200,771 to 2,200,861 _RS10380 ABZR87_RS10385: ABZR87_RS10385 - tRNA-Asn, at 2,200,942 to 2,201,017 _RS10385 ABZR87_RS10390: ABZR87_RS10390 - ferredoxin FdxA, at 2,201,127 to 2,201,456 _RS10390 ABZR87_RS10395: ABZR87_RS10395 - single-stranded-DNA-specific exonuclease RecJ, at 2,201,635 to 2,203,329 _RS10395
Group Condition ABZR87_RS10375 ABZR87_RS10380 ABZR87_RS10385 ABZR87_RS10390 ABZR87_RS10395
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB -0.1 N.D. N.D. N.D. -3.4
soil soil EcoFAB sample 1; outgrowth in LB +0.2 N.D. N.D. N.D. -2.9
soil soil sample 6; outgrowth in LB +0.1 N.D. N.D. N.D. -2.5
rhizosphere rhizosphere sample 3; outgrowth in LB -0.1 N.D. N.D. N.D. -2.1
carbon source Octanoic (C) -0.2 N.D. N.D. N.D. -1.9
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB +0.3 N.D. N.D. N.D. -2.3
root root EcoFAB sample 1; outgrowth in LB -0.2 N.D. N.D. N.D. -1.7
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.0 N.D. N.D. N.D. -1.7
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.0 N.D. N.D. N.D. -1.5
root root EcoFAB sample 2; outgrowth in LB -0.2 N.D. N.D. N.D. -1.3
phage Ra1_0.1 -0.1 N.D. N.D. N.D. -1.4
no_plant_soil no_plant_soil sample 1; outgrowth in LB -0.1 N.D. N.D. N.D. -1.4
soil soil sample 5; outgrowth in LB +0.0 N.D. N.D. N.D. -1.4
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.0 N.D. N.D. N.D. -1.2
carbon source Heptanoic (C) +0.2 N.D. N.D. N.D. -1.4
no_plant_soil no_plant_soil sample 2; outgrowth in LB +0.1 N.D. N.D. N.D. -1.3
soil soil EcoFAB sample 2; outgrowth in LB +0.0 N.D. N.D. N.D. -1.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.1 N.D. N.D. N.D. -1.3
root root sample 6; outgrowth in LB +0.2 N.D. N.D. N.D. -1.4
rhizosphere rhizosphere EcoFAB sample 2; outgrowth in LB +0.1 N.D. N.D. N.D. -1.2
soil soil sample 2; outgrowth in LB +0.1 N.D. N.D. N.D. -1.2
rhizosphere rhizosphere sample 9; outgrowth in LB +0.0 N.D. N.D. N.D. -1.1
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB +0.1 N.D. N.D. N.D. -1.2
carbon source Heptanoic (C) +0.1 N.D. N.D. N.D. -1.1
soil soil sample 9; outgrowth in LB +0.1 N.D. N.D. N.D. -1.2
soil soil sample 3; outgrowth in LB +0.2 N.D. N.D. N.D. -1.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.1 N.D. N.D. N.D. -1.1
carbon source Octanoic (C) +0.2 N.D. N.D. N.D. -1.1
rhizosphere rhizosphere sample 1; outgrowth in LB +0.1 N.D. N.D. N.D. -1.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.2 N.D. N.D. N.D. -1.0
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ABZR87_RS10375
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ABZR87_RS10380
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ABZR87_RS10395
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