Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS10370 and ABZR87_RS10375 are separated by 155 nucleotidesABZR87_RS10375 and ABZR87_RS10380 are separated by 40 nucleotidesABZR87_RS10380 and ABZR87_RS10385 are separated by 80 nucleotidesABZR87_RS10385 and ABZR87_RS10390 are separated by 109 nucleotides ABZR87_RS10370: ABZR87_RS10370 - YeiH family protein, at 2,198,737 to 2,199,840 _RS10370 ABZR87_RS10375: ABZR87_RS10375 - thioredoxin family protein, at 2,199,996 to 2,200,730 _RS10375 ABZR87_RS10380: ABZR87_RS10380 - tRNA-Leu, at 2,200,771 to 2,200,861 _RS10380 ABZR87_RS10385: ABZR87_RS10385 - tRNA-Asn, at 2,200,942 to 2,201,017 _RS10385 ABZR87_RS10390: ABZR87_RS10390 - ferredoxin FdxA, at 2,201,127 to 2,201,456 _RS10390
Group Condition ABZR87_RS10370 ABZR87_RS10375 ABZR87_RS10380 ABZR87_RS10385 ABZR87_RS10390
carbon source Sebacic (C) -0.3 -0.2 N.D. N.D. N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.4 -0.0 N.D. N.D. N.D.
carbon source adipate (C) -0.2 -0.1 N.D. N.D. N.D.
root root EcoFAB sample 1; outgrowth in LB -0.1 -0.2 N.D. N.D. N.D.
carbon source Azelaic (C) -0.1 -0.2 N.D. N.D. N.D.
control NoPredeControl -0.3 +0.1 N.D. N.D. N.D.
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB -0.2 +0.1 N.D. N.D. N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.2 +0.1 N.D. N.D. N.D.
micoeukaryotes C.elegans, mixed culture-2 -0.2 +0.1 N.D. N.D. N.D.
carbon source Octanoic (C) +0.1 -0.2 N.D. N.D. N.D.
carbon source Protocatechuic Acid (C) -0.2 +0.2 N.D. N.D. N.D.
root root EcoFAB sample 2; outgrowth in LB +0.2 -0.2 N.D. N.D. N.D.
rhizosphere rhizosphere sample 7; outgrowth in LB +0.2 -0.2 N.D. N.D. N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.1 +0.2 N.D. N.D. N.D.
carbon source butyrate (C) -0.1 +0.2 N.D. N.D. N.D.
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB -0.1 +0.3 N.D. N.D. N.D.
carbon source Beta-alanine (C) +0.2 +0.1 N.D. N.D. N.D.
root root sample 4; outgrowth in LB +0.2 +0.1 N.D. N.D. N.D.
carbon source Pimelic (C) +0.2 +0.1 N.D. N.D. N.D.
carbon source 4-Hydroxybenzoic Acid (C) +0.2 +0.1 N.D. N.D. N.D.
nitrogen source nitrogen source nitrate 5mM +0.0 +0.3 N.D. N.D. N.D.
carbon source Heptanoic (C) +0.1 +0.2 N.D. N.D. N.D.
carbon source propionate (C) +0.2 +0.1 N.D. N.D. N.D.
carbon source Lauric (C) +0.2 +0.1 N.D. N.D. N.D.
nitrogen source nitrogen source nitrite 0.5mM +0.1 +0.2 N.D. N.D. N.D.
no_plant_soil no_plant_soil sample 2; outgrowth in LB +0.3 +0.1 N.D. N.D. N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.3 +0.1 N.D. N.D. N.D.
phage Ra1_0.01 +0.2 +0.2 N.D. N.D. N.D.
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.4 +0.1 N.D. N.D. N.D.
root root sample 6; outgrowth in LB +0.6 +0.2 N.D. N.D. N.D.
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