Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS10305 and ABZR87_RS10310 are separated by 308 nucleotidesABZR87_RS10310 and ABZR87_RS10315 are separated by 84 nucleotidesABZR87_RS10315 and ABZR87_RS10320 are separated by 101 nucleotidesABZR87_RS10320 and ABZR87_RS10325 are separated by 10 nucleotides ABZR87_RS10305: ABZR87_RS10305 - GlsB/YeaQ/YmgE family stress response membrane protein, at 2,184,068 to 2,184,319 _RS10305 ABZR87_RS10310: ABZR87_RS10310 - FadR/GntR family transcriptional regulator, at 2,184,628 to 2,185,383 _RS10310 ABZR87_RS10315: ABZR87_RS10315 - glucarate dehydratase, at 2,185,468 to 2,186,838 _RS10315 ABZR87_RS10320: ABZR87_RS10320 - MFS transporter, at 2,186,940 to 2,188,232 _RS10320 ABZR87_RS10325: ABZR87_RS10325 - glycoside hydrolase family 31 protein, at 2,188,243 to 2,190,654 _RS10325
Group Condition ABZR87_RS10305 ABZR87_RS10310 ABZR87_RS10315 ABZR87_RS10320 ABZR87_RS10325
carbon source Octanoic (C) -1.2 -1.0 -0.1 +0.1 +0.0
carbon source Heptanoic (C) -0.2 -1.6 -0.1 -0.0 -0.0
carbon source adipate (C) -0.4 -1.3 -0.2 +0.1 +0.1
carbon source 4-Hydroxybenzoic Acid (C) +0.8 -1.8 +0.2 -0.1 -0.4
carbon source Disodium Glutarate (C) -0.8 -0.5 -0.1 +0.2 -0.0
carbon source Octanoic (C) +0.3 -1.3 -0.1 -0.1 +0.1
rhizosphere rhizosphere sample 7; outgrowth in LB -0.6 +0.2 -0.5 -0.2 +0.1
rhizosphere rhizosphere sample 9; outgrowth in LB -0.3 +0.5 -0.6 -0.6 -0.0
carbon source Pimelic (C) +0.1 -0.8 -0.1 -0.2 +0.2
carbon source Heptanoic (C) -0.4 -0.8 +0.1 +0.2 +0.1
carbon source Dodecandioic (C) +0.6 -1.4 +0.1 -0.1 +0.0
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB -0.6 +0.7 -0.8 +0.2 -0.1
carbon source Dodecandioic (C) +0.2 -0.9 +0.2 -0.1 +0.0
carbon source Azelaic (C) +0.7 -1.1 -0.2 -0.2 +0.1
carbon source Pimelic (C) +0.8 -1.6 +0.1 +0.2 +0.0
rhizosphere rhizosphere sample 8; outgrowth in LB -0.6 +0.3 -0.1 +0.1 +0.1
carbon source butyrate (C) +0.8 -0.5 +0.1 -0.2 +0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.4 +0.1 +0.2 -0.4 +0.4
root root EcoFAB sample 1; outgrowth in LB -0.5 +1.0 -0.1 +0.0 +0.2
root root sample 6; outgrowth in LB -0.1 +0.7 -0.2 +0.0 +0.4
rhizosphere rhizosphere sample 6; outgrowth in LB +0.6 +0.6 -0.0 -0.2 +0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.8 -0.1 +0.3 -0.1 +0.3
carbon source Sebacic (C) +0.2 +0.1 +0.4 -0.1 +0.5
rhizosphere rhizosphere sample 5; outgrowth in LB +0.8 +0.3 +0.0 -0.1 +0.2
nitrogen source nitrogen source nitrate 20mM +0.7 +0.4 -0.1 +0.1 +0.1
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB -0.1 +1.8 -0.2 +0.4 +0.2
root root EcoFAB sample 2; outgrowth in LB +0.8 +1.1 -0.1 +0.4 +0.3
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB +0.9 +1.4 -0.1 +0.2 +0.1
carbon source Protocatechuic Acid (C) -0.1 +3.3 +0.0 -0.2 +0.0
carbon source Protocatechuic Acid (C) -0.0 +3.9 +0.2 -0.1 +0.1
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ABZR87_RS10310
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