Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS10260 and ABZR87_RS10265 are separated by 92 nucleotidesABZR87_RS10265 and ABZR87_RS10270 are separated by 169 nucleotidesABZR87_RS10270 and ABZR87_RS10275 are separated by 343 nucleotidesABZR87_RS10275 and ABZR87_RS10280 are separated by 586 nucleotides ABZR87_RS10260: ABZR87_RS10260 - tRNA-Gly, at 2,174,883 to 2,174,958 _RS10260 ABZR87_RS10265: ABZR87_RS10265 - tRNA-Cys, at 2,175,051 to 2,175,124 _RS10265 ABZR87_RS10270: ABZR87_RS10270 - hypothetical protein, at 2,175,294 to 2,176,976 _RS10270 ABZR87_RS10275: ABZR87_RS10275 - DUF5818 domain-containing protein, at 2,177,320 to 2,177,631 _RS10275 ABZR87_RS10280: ABZR87_RS10280 - response regulator transcription factor, at 2,178,218 to 2,178,931 _RS10280
Group Condition ABZR87_RS10260 ABZR87_RS10265 ABZR87_RS10270 ABZR87_RS10275 ABZR87_RS10280
carbon source butyrate (C) N.D. N.D. -0.0 -3.8 -0.0
root root sample 6; outgrowth in LB N.D. N.D. +0.1 -2.5 +0.5
phage Ra1_0.1 N.D. N.D. -0.1 -1.5 -0.1
carbon source D-Glucose (C) N.D. N.D. +0.0 -1.6 +0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. N.D. +0.1 -1.6 +0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. N.D. +0.2 -1.3 -0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. N.D. +0.3 -1.3 -0.1
carbon source Lauric (C) N.D. N.D. +0.1 -1.1 +0.1
rhizosphere rhizosphere sample 2; outgrowth in LB N.D. N.D. -0.0 -0.7 +0.2
rhizosphere rhizosphere sample 8; outgrowth in LB N.D. N.D. +0.1 -0.6 +0.3
carbon source Sebacic (C) N.D. N.D. +0.1 -0.6 +0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. N.D. +0.3 -0.8 +0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. N.D. +0.1 -0.5 +0.4
micoeukaryotes Acanthamoeba sp., muxed culture-1 N.D. N.D. -0.0 +0.6 -0.5
soil soil sample 1; outgrowth in LB N.D. N.D. -0.1 +0.9 -0.2
nitrogen source nitrogen source nitrite 0.5mM N.D. N.D. +0.0 -0.3 +0.9
carbon source Octanoic (C) N.D. N.D. +0.1 +0.7 -0.2
rhizosphere rhizosphere EcoFAB sample 2; outgrowth in LB N.D. N.D. -0.1 +0.7 +0.3
in planta Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) N.D. N.D. +0.1 +0.5 +0.4
micoeukaryotes Dictyostellum sp.mixed culture-2 N.D. N.D. +0.1 +1.0 -0.2
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB N.D. N.D. +0.1 +0.8 +0.2
nitrogen source nitrogen source nitrate 5mM N.D. N.D. +0.2 +0.9 +0.1
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. N.D. +0.2 +1.0 -0.0
no_plant_soil no_plant_soil sample 2; outgrowth in LB N.D. N.D. +0.0 +0.9 +0.3
nitrogen source nitrogen source nitrite 0.5mM N.D. N.D. -0.1 +0.5 +0.8
soil soil EcoFAB sample 1; outgrowth in LB N.D. N.D. +0.2 +1.3 -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. N.D. +0.3 +0.6 +0.5
nitrogen source nitrogen source nitrite 5mM N.D. N.D. -0.0 +1.0 +0.4
nitrogen source nitrogen source nitrite 1mM N.D. N.D. +0.0 +0.8 +0.7
rhizosphere rhizosphere sample 3; outgrowth in LB N.D. N.D. +0.1 +1.4 +0.1
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