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Cofit
Fitness for 5 genes in
Ralstonia sp. UNC404CL21Col
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABZR87_RS10250 and ABZR87_RS10255 are separated by 136 nucleotides
ABZR87_RS10255 and ABZR87_RS10260 are separated by 53 nucleotides
ABZR87_RS10260 and ABZR87_RS10265 are separated by 92 nucleotides
ABZR87_RS10265 and ABZR87_RS10270 are separated by 169 nucleotides
ABZR87_RS10250: ABZR87_RS10250 - CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, at 2,174,042 to 2,174,617
_RS10250
ABZR87_RS10255: ABZR87_RS10255 - tRNA-Gly, at 2,174,754 to 2,174,829
_RS10255
ABZR87_RS10260: ABZR87_RS10260 - tRNA-Gly, at 2,174,883 to 2,174,958
_RS10260
ABZR87_RS10265: ABZR87_RS10265 - tRNA-Cys, at 2,175,051 to 2,175,124
_RS10265
ABZR87_RS10270: ABZR87_RS10270 - hypothetical protein, at 2,175,294 to 2,176,976
_RS10270
Group
Condition
ABZR87
_RS10250
ABZR87
_RS10255
ABZR87
_RS10260
ABZR87
_RS10265
ABZR87
_RS10270
soil
soil sample 4; outgrowth in LB
N.D.
N.D.
N.D.
N.D.
-0.2
no_plant_soil
no_plant_soil sample 1; outgrowth in LB
N.D.
N.D.
N.D.
N.D.
-0.2
rhizosphere
rhizosphere EcoFAB sample 2; outgrowth in LB
N.D.
N.D.
N.D.
N.D.
-0.1
no_plant_rhizosphere
no_plant_rhizosphere sample 1; outgrowth in LB
N.D.
N.D.
N.D.
N.D.
-0.1
phage
Ra1_0.1
N.D.
N.D.
N.D.
N.D.
-0.1
micoeukaryotes
Acanthamoeba sp., muxed culture-2
N.D.
N.D.
N.D.
N.D.
-0.1
soil
soil sample 1; outgrowth in LB
N.D.
N.D.
N.D.
N.D.
-0.1
carbon source
Trans-2-methyl-2-butenoic (C)
N.D.
N.D.
N.D.
N.D.
+0.1
soil
soil EcoFAB sample 2; outgrowth in LB
N.D.
N.D.
N.D.
N.D.
+0.1
carbon source
adipate (C)
N.D.
N.D.
N.D.
N.D.
+0.1
carbon source
Protocatechuic Acid (C)
N.D.
N.D.
N.D.
N.D.
+0.1
carbon source
Hexanoic (C)
N.D.
N.D.
N.D.
N.D.
+0.1
carbon source
Sebacic (C)
N.D.
N.D.
N.D.
N.D.
+0.1
carbon source
L-Glutamic (C)
N.D.
N.D.
N.D.
N.D.
+0.1
carbon source
Lauric (C)
N.D.
N.D.
N.D.
N.D.
+0.1
in planta
Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
N.D.
N.D.
N.D.
N.D.
+0.1
carbon source
D-Glucose (C)
N.D.
N.D.
N.D.
N.D.
+0.1
micoeukaryotes
Dictyostellum sp.mixed culture-2
N.D.
N.D.
N.D.
N.D.
+0.1
nitrogen source
nitrogen source Ammonium chloride 20mM
N.D.
N.D.
N.D.
N.D.
+0.2
nitrogen source
nitrogen source nitrate 5mM
N.D.
N.D.
N.D.
N.D.
+0.2
in planta
Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
N.D.
N.D.
N.D.
N.D.
+0.2
carbon source
Octanoic (C)
N.D.
N.D.
N.D.
N.D.
+0.2
no plant control
Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
N.D.
N.D.
N.D.
N.D.
+0.2
in planta
Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
N.D.
N.D.
N.D.
N.D.
+0.2
carbon source
Heptanoic (C)
N.D.
N.D.
N.D.
N.D.
+0.2
soil
soil EcoFAB sample 1; outgrowth in LB
N.D.
N.D.
N.D.
N.D.
+0.2
rhizosphere
rhizosphere EcoFAB sample 1; outgrowth in LB
N.D.
N.D.
N.D.
N.D.
+0.2
in planta
Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
N.D.
N.D.
N.D.
N.D.
+0.3
in planta
Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
N.D.
N.D.
N.D.
N.D.
+0.3
in planta
Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
N.D.
N.D.
N.D.
N.D.
+0.3
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