Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS10215 and ABZR87_RS10220 overlap by 4 nucleotidesABZR87_RS10220 and ABZR87_RS10225 overlap by 4 nucleotidesABZR87_RS10225 and ABZR87_RS10230 overlap by 4 nucleotidesABZR87_RS10230 and ABZR87_RS10235 are separated by 74 nucleotides ABZR87_RS10215: ABZR87_RS10215 - DNA repair protein RecO, at 2,166,853 to 2,167,674 _RS10215 ABZR87_RS10220: ABZR87_RS10220 - pyridoxine 5'-phosphate synthase, at 2,167,671 to 2,168,462 _RS10220 ABZR87_RS10225: ABZR87_RS10225 - holo-ACP synthase, at 2,168,459 to 2,168,902 _RS10225 ABZR87_RS10230: ABZR87_RS10230 - beta-N-acetylhexosaminidase, at 2,168,899 to 2,169,948 _RS10230 ABZR87_RS10235: ABZR87_RS10235 - elongation factor P, at 2,170,023 to 2,170,592 _RS10235
Group Condition ABZR87_RS10215 ABZR87_RS10220 ABZR87_RS10225 ABZR87_RS10230 ABZR87_RS10235
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB -1.1 N.D. N.D. -1.5 N.D.
soil soil EcoFAB sample 2; outgrowth in LB -0.0 N.D. N.D. -1.7 N.D.
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB -0.8 N.D. N.D. -0.9 N.D.
soil soil EcoFAB sample 1; outgrowth in LB -0.0 N.D. N.D. -1.6 N.D.
root root EcoFAB sample 2; outgrowth in LB -0.2 N.D. N.D. -1.2 N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.0 N.D. N.D. -1.3 N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.1 N.D. N.D. -1.1 N.D.
rhizosphere rhizosphere EcoFAB sample 2; outgrowth in LB +0.1 N.D. N.D. -1.4 N.D.
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB -0.5 N.D. N.D. -0.7 N.D.
rhizosphere rhizosphere sample 3; outgrowth in LB -1.3 N.D. N.D. +0.2 N.D.
soil soil sample 8; outgrowth in LB -0.5 N.D. N.D. -0.5 N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.5 N.D. N.D. -0.5 N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.4 N.D. N.D. -0.6 N.D.
rhizosphere rhizosphere sample 1; outgrowth in LB -0.6 N.D. N.D. -0.3 N.D.
no_plant_soil no_plant_soil sample 2; outgrowth in LB -0.5 N.D. N.D. -0.3 N.D.
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.6 N.D. N.D. -0.2 N.D.
soil soil sample 7; outgrowth in LB -0.5 N.D. N.D. -0.3 N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -1.2 N.D. N.D. +0.5 N.D.
in planta Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) -0.9 N.D. N.D. +0.3 N.D.
carbon source Valeric (C) -0.6 N.D. N.D. +0.5 N.D.
carbon source Protocatechuic Acid (C) -0.4 N.D. N.D. +0.4 N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.7 N.D. N.D. +0.8 N.D.
carbon source 4-Hydroxybenzoic Acid (C) +0.5 N.D. N.D. -0.3 N.D.
carbon source 1,2-Propanediol (C) -0.0 N.D. N.D. +0.7 N.D.
carbon source Lauric (C) -0.1 N.D. N.D. +1.0 N.D.
carbon source Lauric (C) -0.0 N.D. N.D. +0.9 N.D.
nitrogen source nitrogen source nitrate 20mM +0.4 N.D. N.D. +0.6 N.D.
carbon source acetate (C) -0.2 N.D. N.D. +1.1 N.D.
carbon source Octanoic (C) -0.4 N.D. N.D. +1.4 N.D.
carbon source acetate (C) +0.1 N.D. N.D. +1.7 N.D.
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