Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS10030 and ABZR87_RS10035 are separated by 25 nucleotidesABZR87_RS10035 and ABZR87_RS10040 are separated by 181 nucleotidesABZR87_RS10040 and ABZR87_RS10045 are separated by 89 nucleotidesABZR87_RS10045 and ABZR87_RS10050 are separated by 135 nucleotides ABZR87_RS10030: ABZR87_RS10030 - SDR family oxidoreductase, at 2,129,829 to 2,130,569 _RS10030 ABZR87_RS10035: ABZR87_RS10035 - peptide chain release factor 2, at 2,130,595 to 2,131,699 _RS10035 ABZR87_RS10040: ABZR87_RS10040 - nicotinate phosphoribosyltransferase, at 2,131,881 to 2,133,050 _RS10040 ABZR87_RS10045: ABZR87_RS10045 - lactate utilization protein C, at 2,133,140 to 2,133,859 _RS10045 ABZR87_RS10050: ABZR87_RS10050 - sodium:proton antiporter, at 2,133,995 to 2,135,404 _RS10050
Group Condition ABZR87_RS10030 ABZR87_RS10035 ABZR87_RS10040 ABZR87_RS10045 ABZR87_RS10050
carbon source 4-Hydroxybenzoic Acid (C) +0.1 N.D. -1.9 -2.3 N.D.
carbon source Azelaic (C) -0.6 N.D. +0.2 -3.5 N.D.
carbon source Sebacic (C) -2.6 N.D. +0.3 -0.9 N.D.
carbon source Octanoic (C) +0.1 N.D. -0.1 -3.1 N.D.
nitrogen source nitrogen source nitrate 5mM -0.7 N.D. +0.1 -1.5 N.D.
phage Ra1_0.1 -0.1 N.D. -0.1 -1.9 N.D.
carbon source Octanoic (C) -1.4 N.D. +0.3 -0.3 N.D.
carbon source Dodecandioic (C) -0.5 N.D. +0.0 -0.8 N.D.
root root EcoFAB sample 1; outgrowth in LB -0.9 N.D. +0.1 -0.4 N.D.
root root sample 5; outgrowth in LB +0.1 N.D. -0.1 -1.3 N.D.
root root sample 4; outgrowth in LB -0.6 N.D. +0.2 -0.8 N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.8 N.D. -0.6 -1.0 N.D.
nitrogen source nitrogen source nitrate 20mM -0.9 N.D. -0.0 +0.5 N.D.
nitrogen source nitrogen source nitrite 0.5mM -1.0 N.D. -0.1 +0.6 N.D.
soil soil sample 8; outgrowth in LB +0.6 N.D. +0.0 -1.0 N.D.
root root sample 6; outgrowth in LB +0.6 N.D. +0.3 -1.1 N.D.
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB +0.7 N.D. -0.3 -0.6 N.D.
carbon source acetate (C) -0.7 N.D. -0.1 +0.6 N.D.
no_plant_rhizosphere no_plant_rhizosphere sample 1; outgrowth in LB +0.7 N.D. -0.3 -0.4 N.D.
nitrogen source nitrogen source nitrate 20mM -0.6 N.D. +0.2 +0.5 N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +1.2 N.D. -0.4 -0.4 N.D.
soil soil EcoFAB sample 1; outgrowth in LB +0.7 N.D. -0.4 +0.3 N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.8 N.D. +0.0 +1.5 N.D.
carbon source propionate (C) -0.1 N.D. -0.3 +1.3 N.D.
phage Ra3_0.1 +0.4 N.D. -0.2 +0.7 N.D.
root root EcoFAB sample 2; outgrowth in LB +0.9 N.D. -0.3 +0.5 N.D.
carbon source Pimelic (C) +0.0 N.D. -0.1 +1.3 N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +1.0 N.D. +0.2 +0.2 N.D.
carbon source Sebacic (C) +0.3 N.D. +0.1 +1.5 N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +1.9 N.D. +0.4 +0.1 N.D.
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ABZR87_RS10030
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ABZR87_RS10035
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ABZR87_RS10045
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ABZR87_RS10050
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