Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS09940 and ABZR87_RS09945 are separated by 159 nucleotidesABZR87_RS09945 and ABZR87_RS09950 are separated by 2 nucleotidesABZR87_RS09950 and ABZR87_RS09955 are separated by 37 nucleotidesABZR87_RS09955 and ABZR87_RS09960 are separated by 18 nucleotides ABZR87_RS09940: ABZR87_RS09940 - excinuclease ABC subunit UvrB, at 2,110,734 to 2,112,824 _RS09940 ABZR87_RS09945: ABZR87_RS09945 - recombinase, at 2,112,984 to 2,115,068 _RS09945 ABZR87_RS09950: ABZR87_RS09950 - ribokinase, at 2,115,071 to 2,116,036 _RS09950 ABZR87_RS09955: ABZR87_RS09955 - LacI family DNA-binding transcriptional regulator, at 2,116,074 to 2,117,114 _RS09955 ABZR87_RS09960: ABZR87_RS09960 - ABC transporter permease, at 2,117,133 to 2,118,140 _RS09960
Group Condition ABZR87_RS09940 ABZR87_RS09945 ABZR87_RS09950 ABZR87_RS09955 ABZR87_RS09960
carbon source Lauric (C) +0.4 -3.4 -0.3 -0.1 -0.6
no_plant_soil no_plant_soil sample 1; outgrowth in LB -1.3 -0.2 -0.1 -1.4 -0.0
soil soil EcoFAB sample 1; outgrowth in LB -2.3 +0.3 -0.9 -0.3 +0.4
no_plant_soil no_plant_soil sample 2; outgrowth in LB -1.5 -0.2 -0.1 -1.6 +0.8
no_plant_soil no_plant_soil sample 3; outgrowth in LB -1.6 -0.3 -0.2 -1.6 +1.1
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB -1.4 -0.2 -1.3 -1.8 +2.3
soil soil EcoFAB sample 2; outgrowth in LB -2.1 +0.2 -0.3 -0.4 +0.3
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB -2.1 +0.0 -0.5 -0.3 +0.6
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.4 -0.2 -0.4 -1.4 +0.4
root root EcoFAB sample 2; outgrowth in LB -1.4 +0.2 -0.5 -0.4 +0.2
carbon source 4-Hydroxybenzoic Acid (C) -0.1 -0.2 -0.5 -2.2 +1.3
phage Ra1_0.1 -0.9 -1.0 -0.3 +0.1 +0.7
root root EcoFAB sample 1; outgrowth in LB -1.4 +0.2 -0.6 -0.3 +0.7
no_plant_rhizosphere no_plant_rhizosphere sample 1; outgrowth in LB -1.3 -0.2 -0.3 -1.5 +2.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.9 +0.0 -0.3 -1.4 +1.4
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -1.0 +0.4 -0.5 -0.9 +0.9
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -1.2 +0.3 -1.0 -0.6 +1.4
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.7 +0.2 -0.5 -0.9 +1.4
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -1.2 +0.3 -0.8 -0.8 +2.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.5 +0.1 +0.1 -1.0 +1.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.9 +0.4 -0.0 -1.9 +2.2
carbon source Sebacic (C) -0.9 -1.0 +0.0 -0.7 +2.6
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.9 +0.5 +0.4 -0.7 +0.6
carbon source Sebacic (C) -0.2 -0.6 -0.5 -0.1 +1.6
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB -0.7 +0.3 -0.4 -1.7 +2.9
carbon source Azelaic (C) -0.0 -0.9 -0.5 +0.0 +2.1
carbon source Heptanoic (C) -0.5 -2.0 -0.1 +0.3 +3.0
carbon source Heptanoic (C) -0.5 -1.6 -0.1 +0.5 +3.3
carbon source Dodecandioic (C) -0.3 -1.2 -0.0 -0.0 +3.7
carbon source Dodecandioic (C) -0.1 -0.8 -0.5 -0.0 +3.5
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ABZR87_RS09940
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ABZR87_RS09945
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