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Cofit
Protein
Homologs
Fitness for 5 genes in
Ralstonia sp. UNC404CL21Col
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABZR87_RS09930 and ABZR87_RS09935 are separated by 205 nucleotides
ABZR87_RS09935 and ABZR87_RS09940 are separated by 337 nucleotides
ABZR87_RS09940 and ABZR87_RS09945 are separated by 159 nucleotides
ABZR87_RS09945 and ABZR87_RS09950 are separated by 2 nucleotides
ABZR87_RS09930: ABZR87_RS09930 - polyhydroxyalkanoate depolymerase, at 2,107,723 to 2,108,994
_RS09930
ABZR87_RS09935: ABZR87_RS09935 - amino acid aminotransferase, at 2,109,200 to 2,110,396
_RS09935
ABZR87_RS09940: ABZR87_RS09940 - excinuclease ABC subunit UvrB, at 2,110,734 to 2,112,824
_RS09940
ABZR87_RS09945: ABZR87_RS09945 - recombinase, at 2,112,984 to 2,115,068
_RS09945
ABZR87_RS09950: ABZR87_RS09950 - ribokinase, at 2,115,071 to 2,116,036
_RS09950
Group
Condition
ABZR87
_RS09930
ABZR87
_RS09935
ABZR87
_RS09940
ABZR87
_RS09945
ABZR87
_RS09950
carbon source
Lauric (C)
-1.1
-4.3
+0.4
-3.4
-0.3
carbon source
Heptanoic (C)
-0.9
-4.6
-0.5
-2.0
-0.1
carbon source
butyrate (C)
-1.2
-4.7
-0.5
+0.1
-0.6
carbon source
Sebacic (C)
-1.6
-3.9
-0.2
-0.6
-0.5
carbon source
Dodecandioic (C)
-1.1
-4.0
-0.1
-0.8
-0.5
carbon source
Dodecandioic (C)
-1.4
-3.4
-0.3
-1.2
-0.0
carbon source
Heptanoic (C)
-0.6
-3.6
-0.5
-1.6
-0.1
carbon source
Azelaic (C)
-1.4
-3.3
-0.0
-0.9
-0.5
rhizosphere
rhizosphere EcoFAB sample 1; outgrowth in LB
-0.7
-2.6
-2.1
+0.0
-0.5
soil
soil EcoFAB sample 1; outgrowth in LB
-0.7
-2.4
-2.3
+0.3
-0.9
carbon source
Protocatechuic Acid (C)
-0.1
-5.1
-0.1
-0.1
-0.1
carbon source
Hexanoic (C)
-0.3
-4.1
-0.3
-0.3
-0.4
carbon source
Pimelic (C)
-0.4
-4.9
+0.1
+0.1
-0.3
carbon source
D-Glucose (C)
-0.1
-4.9
-0.1
-0.1
-0.0
carbon source
D-Glucose (C)
-0.3
-5.0
-0.1
+0.1
-0.1
carbon source
D-Galactose (C)
-0.3
-4.7
-0.1
-0.1
-0.1
carbon source
Pimelic (C)
-0.1
-4.6
-0.2
-0.2
-0.2
carbon source
Octanoic (C)
-0.5
-3.6
-0.5
-0.6
-0.1
carbon source
Beta-alanine (C)
-0.3
-4.6
-0.1
-0.0
-0.2
carbon source
Trans-2-methyl-2-butenoic (C)
-0.1
-4.4
-0.4
-0.1
-0.2
soil
soil EcoFAB sample 2; outgrowth in LB
-0.4
-2.6
-2.1
+0.2
-0.3
carbon source
Trans-2-methyl-2-butenoic (C)
-0.2
-4.5
-0.2
+0.1
-0.3
carbon source
D-Galactose (C)
-0.3
-4.9
+0.1
-0.1
+0.1
carbon source
3-Hydroxypropionate (C)
-0.1
-4.7
-0.2
+0.1
-0.1
carbon source
D-Glucose (C)
-0.5
-4.2
-0.2
+0.3
-0.3
carbon source
Glycerol (C)
-0.1
-4.8
-0.1
+0.2
-0.1
carbon source
Pimelic (C)
-0.2
-4.8
+0.1
+0.2
+0.0
no_plant_soil
no_plant_soil sample 3; outgrowth in LB
+0.4
-3.1
-1.6
-0.3
-0.2
carbon source
propionate (C)
-0.5
-4.6
+0.2
+0.4
-0.1
carbon source
D-Glucose (C)
-0.5
-3.8
-0.2
+0.5
-0.3
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