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Cofit
Protein
Homologs
Fitness for 5 genes in
Ralstonia sp. UNC404CL21Col
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABZR87_RS09915 and ABZR87_RS09920 are separated by 14 nucleotides
ABZR87_RS09920 and ABZR87_RS09925 are separated by 140 nucleotides
ABZR87_RS09925 and ABZR87_RS09930 are separated by 77 nucleotides
ABZR87_RS09930 and ABZR87_RS09935 are separated by 205 nucleotides
ABZR87_RS09915: ABZR87_RS09915 - endonuclease III, at 2,105,320 to 2,105,964
_RS09915
ABZR87_RS09920: ABZR87_RS09920 - electron transport complex subunit RsxB, at 2,105,979 to 2,106,809
_RS09920
ABZR87_RS09925: ABZR87_RS09925 - TetR/AcrR family transcriptional regulator, at 2,106,950 to 2,107,645
_RS09925
ABZR87_RS09930: ABZR87_RS09930 - polyhydroxyalkanoate depolymerase, at 2,107,723 to 2,108,994
_RS09930
ABZR87_RS09935: ABZR87_RS09935 - amino acid aminotransferase, at 2,109,200 to 2,110,396
_RS09935
Group
Condition
ABZR87
_RS09915
ABZR87
_RS09920
ABZR87
_RS09925
ABZR87
_RS09930
ABZR87
_RS09935
carbon source
butyrate (C)
-0.5
-0.1
+0.3
-1.2
-4.7
carbon source
D-Glucose (C)
-0.5
-0.3
+0.1
-0.5
-4.2
carbon source
Heptanoic (C)
-0.2
-0.0
+0.2
-0.9
-4.6
carbon source
Sebacic (C)
+0.2
-0.5
+0.3
-1.6
-3.9
carbon source
Beta-alanine (C)
-0.1
-0.2
-0.3
-0.3
-4.6
carbon source
Pimelic (C)
-0.1
-0.1
+0.1
-0.4
-4.9
carbon source
Dodecandioic (C)
-0.1
-0.2
+0.1
-1.1
-4.0
carbon source
D-Galactose (C)
-0.1
+0.0
+0.1
-0.3
-4.9
carbon source
propionate (C)
-0.5
+0.3
+0.1
-0.5
-4.6
carbon source
3-Hydroxypropionate (C)
-0.4
+0.1
+0.0
-0.1
-4.7
carbon source
D-Glucose (C)
+0.3
-0.1
-0.0
-0.3
-5.0
carbon source
propionate (C)
-0.1
-0.1
-0.0
-0.1
-4.7
carbon source
Glycerol (C)
-0.2
-0.1
+0.2
-0.2
-4.7
carbon source
Pimelic (C)
+0.0
-0.0
+0.1
-0.2
-4.8
carbon source
D-Galactose (C)
+0.1
-0.2
+0.2
-0.3
-4.7
carbon source
propionate (C)
-0.1
+0.3
+0.0
-0.2
-4.9
carbon source
Azelaic (C)
-0.5
+0.5
-0.1
-1.4
-3.3
carbon source
D-Glucose (C)
+0.1
+0.1
+0.1
-0.1
-4.9
carbon source
Lauric (C)
-0.0
+0.8
+0.1
-1.1
-4.3
carbon source
Protocatechuic Acid (C)
+0.1
+0.1
+0.2
-0.1
-4.7
carbon source
Trans-2-methyl-2-butenoic (C)
-0.2
+0.3
+0.1
-0.2
-4.5
carbon source
Pimelic (C)
-0.1
+0.1
+0.4
-0.1
-4.6
carbon source
Protocatechuic Acid (C)
+0.3
+0.6
+0.0
-0.1
-5.1
carbon source
Beta-alanine (C)
+0.1
+0.3
-0.2
-0.2
-4.2
carbon source
succinate (C)
-0.8
+0.4
+0.1
-0.3
-3.6
carbon source
Glycerol (C)
+0.2
+0.2
+0.2
-0.1
-4.8
carbon source
Hexanoic (C)
-0.3
+0.3
+0.3
-0.5
-3.9
carbon source
Trans-2-methyl-2-butenoic (C)
+0.1
+0.5
+0.1
-0.1
-4.4
carbon source
Sebacic (C)
+1.0
-1.4
-0.1
-0.2
-3.0
carbon source
Octanoic (C)
-0.9
+1.2
+0.5
-0.5
-3.6
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