Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS09905 and ABZR87_RS09910 are separated by 604 nucleotidesABZR87_RS09910 and ABZR87_RS09915 are separated by 60 nucleotidesABZR87_RS09915 and ABZR87_RS09920 are separated by 14 nucleotidesABZR87_RS09920 and ABZR87_RS09925 are separated by 140 nucleotides ABZR87_RS09905: ABZR87_RS09905 - peptidase S1, at 2,102,262 to 2,104,067 _RS09905 ABZR87_RS09910: ABZR87_RS09910 - malonic semialdehyde reductase, at 2,104,672 to 2,105,259 _RS09910 ABZR87_RS09915: ABZR87_RS09915 - endonuclease III, at 2,105,320 to 2,105,964 _RS09915 ABZR87_RS09920: ABZR87_RS09920 - electron transport complex subunit RsxB, at 2,105,979 to 2,106,809 _RS09920 ABZR87_RS09925: ABZR87_RS09925 - TetR/AcrR family transcriptional regulator, at 2,106,950 to 2,107,645 _RS09925
Group Condition ABZR87_RS09905 ABZR87_RS09910 ABZR87_RS09915 ABZR87_RS09920 ABZR87_RS09925
soil soil EcoFAB sample 1; outgrowth in LB +0.2 -0.7 -1.2 -0.1 -0.6
root root EcoFAB sample 2; outgrowth in LB +0.1 -1.1 +0.0 +0.0 -0.7
carbon source D-Xylose (C) -0.1 -0.7 -0.7 -0.2 -0.0
rhizosphere rhizosphere sample 2; outgrowth in LB -0.1 -0.7 -0.1 -0.5 -0.1
root root sample 5; outgrowth in LB +0.3 -0.7 -0.6 +0.1 -0.5
rhizosphere rhizosphere sample 3; outgrowth in LB +0.2 +0.1 -1.5 -0.0 +0.1
nitrogen source nitrogen source nitrite 0.5mM -0.0 -0.6 +0.1 -0.6 +0.2
nitrogen source nitrogen source nitrite 5mM -0.2 -0.3 -0.7 +0.1 +0.1
root root sample 6; outgrowth in LB +0.1 +0.2 -1.3 +0.4 +0.0
root root EcoFAB sample 1; outgrowth in LB +0.1 -0.1 -0.5 +0.3 -0.4
nitrogen source nitrogen source nitrate 5mM +0.1 -0.4 -0.5 +0.4 -0.1
carbon source Sebacic (C) +0.1 +0.0 +1.0 -1.4 -0.1
carbon source D-Glucose (C) +0.2 +0.4 -0.5 -0.3 +0.1
carbon source Octanoic (C) +0.1 +0.1 -1.2 +0.9 +0.2
carbon source succinate (C) +0.2 +0.3 -0.8 +0.4 +0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.1 -0.3 +0.0 +0.6 -0.2
rhizosphere rhizosphere sample 7; outgrowth in LB +0.1 +0.3 +0.4 -0.4 -0.1
carbon source propionate (C) +0.2 +0.3 -0.5 +0.3 +0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.0 -0.7 +0.0 +1.0 +0.2
carbon source Hexanoic (C) +0.2 +0.2 -0.3 +0.3 +0.3
carbon source Azelaic (C) +0.3 +0.5 -0.5 +0.5 -0.1
carbon source Protocatechuic Acid (C) +0.1 -0.3 +0.3 +0.6 +0.0
carbon source Octanoic (C) +0.3 -0.2 -0.9 +1.2 +0.5
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.1 +0.4 +0.8 -0.3 +0.1
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB +0.3 -0.3 +1.2 +0.1 -0.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.0 +0.5 +0.3 +0.2 +0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.1 +0.6 +0.5 -0.1 +0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.0 +1.4 +0.8 -0.5 -0.1
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.3 -0.4 +0.2 +2.3 -0.4
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.1 +0.3 +1.1 +0.5 +0.1
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