Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS09645 and ABZR87_RS09650 are separated by 0 nucleotidesABZR87_RS09650 and ABZR87_RS09655 overlap by 4 nucleotidesABZR87_RS09655 and ABZR87_RS09660 are separated by 93 nucleotidesABZR87_RS09660 and ABZR87_RS09665 are separated by 64 nucleotides ABZR87_RS09645: ABZR87_RS09645 - oligoribonuclease, at 2,044,687 to 2,045,346 _RS09645 ABZR87_RS09650: ABZR87_RS09650 - molybdopterin adenylyltransferase, at 2,045,347 to 2,045,994 _RS09650 ABZR87_RS09655: ABZR87_RS09655 - ribosome biogenesis factor YjgA, at 2,045,991 to 2,046,608 _RS09655 ABZR87_RS09660: ABZR87_RS09660 - metalloprotease PmbA, at 2,046,702 to 2,048,075 _RS09660 ABZR87_RS09665: ABZR87_RS09665 - dihydrofolate reductase, at 2,048,140 to 2,048,643 _RS09665
Group Condition ABZR87_RS09645 ABZR87_RS09650 ABZR87_RS09655 ABZR87_RS09660 ABZR87_RS09665
nitrogen source nitrogen source nitrate 20mM N.D. -3.9 -1.2 +0.0 N.D.
nitrogen source nitrogen source nitrate 20mM N.D. -3.4 -1.0 +0.3 N.D.
nitrogen source nitrogen source nitrate 5mM N.D. -3.0 -1.1 +0.1 N.D.
nitrogen source nitrogen source nitrate 5mM N.D. -2.4 -1.1 -0.1 N.D.
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB N.D. -1.3 -0.7 -1.0 N.D.
soil soil EcoFAB sample 1; outgrowth in LB N.D. -1.9 -0.2 -0.8 N.D.
root root sample 5; outgrowth in LB N.D. -1.3 -1.6 +0.3 N.D.
carbon source Sebacic (C) N.D. -0.1 -1.4 -1.0 N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -1.4 -0.8 -0.3 N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -1.5 -1.0 +0.0 N.D.
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -1.9 -0.5 -0.1 N.D.
no_plant_soil no_plant_soil sample 3; outgrowth in LB N.D. -1.6 -1.0 +0.2 N.D.
carbon source 4-Hydroxybenzoic Acid (C) N.D. -0.4 -1.6 -0.3 N.D.
root root EcoFAB sample 1; outgrowth in LB N.D. -1.1 -0.2 -0.7 N.D.
no_plant_soil no_plant_soil sample 1; outgrowth in LB N.D. -1.2 -0.7 -0.1 N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -1.1 -0.8 -0.0 N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -1.0 -0.8 +0.0 N.D.
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB N.D. -1.5 -0.9 +0.5 N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -1.5 -0.3 +0.1 N.D.
rhizosphere rhizosphere sample 7; outgrowth in LB N.D. -1.3 -0.7 +0.2 N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -1.0 -0.8 +0.1 N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -1.8 +0.1 -0.0 N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -0.7 -1.1 +0.2 N.D.
soil soil EcoFAB sample 2; outgrowth in LB N.D. -0.8 +0.1 -0.8 N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -1.1 -0.5 +0.1 N.D.
no_plant_rhizosphere no_plant_rhizosphere sample 1; outgrowth in LB N.D. -1.2 -0.8 +0.6 N.D.
no_plant_soil no_plant_soil sample 2; outgrowth in LB N.D. -0.9 -0.6 +0.2 N.D.
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB N.D. -1.1 -0.9 +0.7 N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -1.4 +0.0 +0.2 N.D.
soil soil sample 5; outgrowth in LB N.D. -0.4 -0.6 +0.6 N.D.
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