Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS09530 and ABZR87_RS09535 overlap by 11 nucleotidesABZR87_RS09535 and ABZR87_RS09540 are separated by 33 nucleotidesABZR87_RS09540 and ABZR87_RS09545 are separated by 189 nucleotidesABZR87_RS09545 and ABZR87_RS09550 are separated by 65 nucleotides ABZR87_RS09530: ABZR87_RS09530 - methionine ABC transporter ATP-binding protein, at 2,023,872 to 2,024,921 _RS09530 ABZR87_RS09535: ABZR87_RS09535 - methionine ABC transporter permease, at 2,024,911 to 2,025,564 _RS09535 ABZR87_RS09540: ABZR87_RS09540 - MetQ/NlpA family ABC transporter substrate-binding protein, at 2,025,598 to 2,026,398 _RS09540 ABZR87_RS09545: ABZR87_RS09545 - electron transfer flavoprotein subunit beta/FixA family protein, at 2,026,588 to 2,027,337 _RS09545 ABZR87_RS09550: ABZR87_RS09550 - FAD-binding protein, at 2,027,403 to 2,028,338 _RS09550
Group Condition ABZR87_RS09530 ABZR87_RS09535 ABZR87_RS09540 ABZR87_RS09545 ABZR87_RS09550
root root sample 6; outgrowth in LB -0.7 -0.8 -0.2 N.D. N.D.
soil soil EcoFAB sample 2; outgrowth in LB -1.1 -0.3 -0.2 N.D. N.D.
rhizosphere rhizosphere sample 7; outgrowth in LB -0.4 -1.0 -0.0 N.D. N.D.
rhizosphere rhizosphere sample 8; outgrowth in LB -0.4 -0.8 -0.2 N.D. N.D.
carbon source Octanoic (C) -0.5 -0.6 -0.2 N.D. N.D.
rhizosphere rhizosphere sample 9; outgrowth in LB -0.8 -0.6 +0.1 N.D. N.D.
carbon source Sebacic (C) -0.2 -0.2 -0.8 N.D. N.D.
carbon source Dodecandioic (C) -0.1 -0.8 -0.4 N.D. N.D.
rhizosphere rhizosphere sample 6; outgrowth in LB -0.5 -0.6 -0.1 N.D. N.D.
soil soil sample 7; outgrowth in LB -0.3 -0.6 -0.2 N.D. N.D.
root root EcoFAB sample 2; outgrowth in LB +0.1 -1.2 -0.1 N.D. N.D.
carbon source Azelaic (C) -0.2 -0.6 -0.4 N.D. N.D.
carbon source Sebacic (C) -0.1 -0.7 -0.4 N.D. N.D.
root root sample 5; outgrowth in LB +0.0 -0.9 -0.1 N.D. N.D.
soil soil sample 2; outgrowth in LB -0.2 -0.6 -0.2 N.D. N.D.
rhizosphere rhizosphere sample 3; outgrowth in LB -0.4 -0.4 -0.1 N.D. N.D.
carbon source L-Glutamic (C) -0.4 -0.5 -0.0 N.D. N.D.
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB -0.2 -0.7 +0.2 N.D. N.D.
carbon source succinate (C) +0.3 -0.7 -0.0 N.D. N.D.
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB -1.1 +0.3 +0.6 N.D. N.D.
carbon source Protocatechuic Acid (C) +0.4 -0.5 -0.0 N.D. N.D.
carbon source Octanoic (C) -0.3 +0.6 -0.3 N.D. N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.3 +0.3 -0.3 N.D. N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.2 +0.4 +0.4 N.D. N.D.
carbon source Protocatechuic Acid (C) -0.1 +0.8 +0.1 N.D. N.D.
phage Ra3_1 -0.1 +0.8 +0.1 N.D. N.D.
phage Ra1_0.1 +0.4 +1.0 -0.5 N.D. N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.2 +0.7 +0.3 N.D. N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.1 +0.8 +0.1 N.D. N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.6 +1.3 -0.1 N.D. N.D.
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ABZR87_RS09530
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ABZR87_RS09535
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ABZR87_RS09545
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ABZR87_RS09550
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