Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS09520 and ABZR87_RS09525 are separated by 131 nucleotidesABZR87_RS09525 and ABZR87_RS09530 are separated by 166 nucleotidesABZR87_RS09530 and ABZR87_RS09535 overlap by 11 nucleotidesABZR87_RS09535 and ABZR87_RS09540 are separated by 33 nucleotides ABZR87_RS09520: ABZR87_RS09520 - lytic murein transglycosylase B, at 2,021,526 to 2,022,650 _RS09520 ABZR87_RS09525: ABZR87_RS09525 - histone deacetylase family protein, at 2,022,782 to 2,023,705 _RS09525 ABZR87_RS09530: ABZR87_RS09530 - methionine ABC transporter ATP-binding protein, at 2,023,872 to 2,024,921 _RS09530 ABZR87_RS09535: ABZR87_RS09535 - methionine ABC transporter permease, at 2,024,911 to 2,025,564 _RS09535 ABZR87_RS09540: ABZR87_RS09540 - MetQ/NlpA family ABC transporter substrate-binding protein, at 2,025,598 to 2,026,398 _RS09540
Group Condition ABZR87_RS09520 ABZR87_RS09525 ABZR87_RS09530 ABZR87_RS09535 ABZR87_RS09540
carbon source Octanoic (C) +0.1 -2.1 -0.5 -0.6 -0.2
root root sample 6; outgrowth in LB -0.5 -0.3 -0.7 -0.8 -0.2
carbon source Azelaic (C) -0.0 -1.2 -0.2 -0.6 -0.4
carbon source Dodecandioic (C) -0.1 -1.0 -0.1 -0.8 -0.4
carbon source acetate (C) -0.2 -1.2 +0.0 -0.6 -0.0
rhizosphere rhizosphere sample 8; outgrowth in LB -0.3 -0.2 -0.4 -0.8 -0.2
carbon source Octanoic (C) +0.0 -1.8 -0.3 +0.6 -0.3
carbon source Sebacic (C) +0.1 -0.6 -0.2 -0.2 -0.8
carbon source Sebacic (C) +0.1 -0.6 -0.1 -0.7 -0.4
carbon source Lauric (C) -0.8 -0.3 -0.0 -0.3 -0.2
rhizosphere rhizosphere sample 7; outgrowth in LB -0.0 -0.1 -0.4 -1.0 -0.0
rhizosphere rhizosphere sample 9; outgrowth in LB +0.0 -0.2 -0.8 -0.6 +0.1
root root sample 5; outgrowth in LB -0.3 -0.2 +0.0 -0.9 -0.1
carbon source Dodecandioic (C) +0.0 -1.3 -0.2 +0.3 -0.4
carbon source Trans-2-methyl-2-butenoic (C) -0.0 -0.8 -0.3 -0.1 -0.1
root root EcoFAB sample 2; outgrowth in LB -0.3 +0.0 +0.1 -1.2 -0.1
rhizosphere rhizosphere sample 6; outgrowth in LB -0.1 -0.0 -0.5 -0.6 -0.1
soil soil EcoFAB sample 2; outgrowth in LB +0.4 +0.0 -1.1 -0.3 -0.2
soil soil sample 7; outgrowth in LB +0.2 -0.1 -0.3 -0.6 -0.2
carbon source acetate (C) -0.0 -1.0 +0.0 -0.2 +0.1
carbon source Heptanoic (C) +0.4 -0.8 -0.0 -0.5 +0.0
carbon source Heptanoic (C) +0.4 -0.9 -0.0 -0.2 -0.0
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB +0.6 -0.3 -0.2 -0.7 +0.2
carbon source 4-Hydroxybenzoic Acid (C) +0.6 -0.4 -0.4 +0.1 -0.0
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB +0.0 +0.2 -1.1 +0.3 +0.6
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.4 +0.4 +0.5 -0.3 +0.0
phage Ra1_0.1 -0.4 +0.0 +0.4 +1.0 -0.5
carbon source Protocatechuic Acid (C) +0.2 -0.2 -0.1 +0.8 +0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.0 +0.3 -0.2 +0.7 +0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.6 +0.2 +0.6 +1.3 -0.1
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ABZR87_RS09520
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ABZR87_RS09525
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ABZR87_RS09535
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ABZR87_RS09540
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