Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS09485 and ABZR87_RS09490 are separated by 3 nucleotidesABZR87_RS09490 and ABZR87_RS09495 are separated by 64 nucleotidesABZR87_RS09495 and ABZR87_RS09500 are separated by 38 nucleotidesABZR87_RS09500 and ABZR87_RS09505 are separated by 18 nucleotides ABZR87_RS09485: ABZR87_RS09485 - lipopolysaccharide assembly protein LapA domain-containing protein, at 2,014,973 to 2,015,296 _RS09485 ABZR87_RS09490: ABZR87_RS09490 - lipopolysaccharide assembly protein LapB, at 2,015,300 to 2,016,574 _RS09490 ABZR87_RS09495: ABZR87_RS09495 - UDP-glucose/GDP-mannose dehydrogenase family protein, at 2,016,639 to 2,018,003 _RS09495 ABZR87_RS09500: ABZR87_RS09500 - D-glycero-beta-D-manno-heptose-7-phosphate kinase, at 2,018,042 to 2,018,974 _RS09500 ABZR87_RS09505: ABZR87_RS09505 - ADP-glyceromanno-heptose 6-epimerase, at 2,018,993 to 2,019,988 _RS09505
Group Condition ABZR87_RS09485 ABZR87_RS09490 ABZR87_RS09495 ABZR87_RS09500 ABZR87_RS09505
carbon source Lauric (C) N.D. N.D. N.D. -6.1 -6.8
carbon source Octanoic (C) N.D. N.D. N.D. -5.1 -5.7
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. N.D. N.D. -4.1 -5.9
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. N.D. N.D. -4.2 -4.4
carbon source Octanoic (C) N.D. N.D. N.D. -4.4 -4.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. N.D. N.D. -3.0 -4.4
no_plant_rhizosphere no_plant_rhizosphere sample 1; outgrowth in LB N.D. N.D. N.D. -4.0 -2.5
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. N.D. N.D. -2.8 -3.6
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. N.D. N.D. -3.3 -2.8
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. N.D. N.D. -2.6 -3.6
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. N.D. N.D. -3.9 -2.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. N.D. N.D. -3.0 -2.4
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. N.D. N.D. -2.2 -3.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. N.D. N.D. -2.2 -3.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. N.D. N.D. -3.0 -2.2
rhizosphere rhizosphere sample 6; outgrowth in LB N.D. N.D. N.D. +4.2 +0.8
soil soil sample 9; outgrowth in LB N.D. N.D. N.D. +2.8 +2.3
root root sample 6; outgrowth in LB N.D. N.D. N.D. +4.5 +0.7
root root sample 5; outgrowth in LB N.D. N.D. N.D. +5.0 +0.7
rhizosphere rhizosphere sample 5; outgrowth in LB N.D. N.D. N.D. +4.9 +1.1
root root EcoFAB sample 1; outgrowth in LB N.D. N.D. N.D. +3.5 +2.7
root root sample 4; outgrowth in LB N.D. N.D. N.D. +4.4 +1.8
rhizosphere rhizosphere sample 4; outgrowth in LB N.D. N.D. N.D. +5.2 +1.4
rhizosphere rhizosphere sample 2; outgrowth in LB N.D. N.D. N.D. +5.2 +1.5
rhizosphere rhizosphere sample 8; outgrowth in LB N.D. N.D. N.D. +4.8 +2.1
rhizosphere rhizosphere sample 9; outgrowth in LB N.D. N.D. N.D. +4.3 +2.8
rhizosphere rhizosphere sample 3; outgrowth in LB N.D. N.D. N.D. +5.6 +2.6
rhizosphere rhizosphere sample 7; outgrowth in LB N.D. N.D. N.D. +6.2 +2.3
root root EcoFAB sample 2; outgrowth in LB N.D. N.D. N.D. +5.8 +2.7
rhizosphere rhizosphere sample 1; outgrowth in LB N.D. N.D. N.D. +6.4 +3.9
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