Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 129 experiments or choose conditions or try the comparative fitness browser

500 ntABZR87_RS09400 and ABZR87_RS09410 are separated by 917 nucleotidesABZR87_RS09410 and ABZR87_RS09415 are separated by 118 nucleotidesABZR87_RS09415 and ABZR87_RS09420 overlap by 4 nucleotidesABZR87_RS09420 and ABZR87_RS09425 are separated by 159 nucleotides ABZR87_RS09400: ABZR87_RS09400 - IS3 family transposase, at 1,994,141 to 1,994,276 _RS09400 ABZR87_RS09410: ABZR87_RS09410 - DUF748 domain-containing protein, at 1,995,194 to 1,998,976 _RS09410 ABZR87_RS09415: ABZR87_RS09415 - HAD-IA family hydrolase, at 1,999,095 to 1,999,784 _RS09415 ABZR87_RS09420: ABZR87_RS09420 - bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG, at 1,999,781 to 2,000,497 _RS09420 ABZR87_RS09425: ABZR87_RS09425 - glycine zipper 2TM domain-containing protein, at 2,000,657 to 2,001,166 _RS09425
Group Condition ABZR87_RS09400 ABZR87_RS09410 ABZR87_RS09415 ABZR87_RS09420 ABZR87_RS09425
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB N.D. -0.2 -1.8 N.D. +0.3
soil soil EcoFAB sample 1; outgrowth in LB N.D. -0.0 -1.0 N.D. -0.3
nitrogen source nitrogen source nitrite 0.5mM N.D. +0.1 -1.1 N.D. -0.2
carbon source 4-Hydroxybenzoic Acid (C) N.D. +0.2 -1.6 N.D. +0.4
carbon source Protocatechuic Acid (C) N.D. -0.0 -0.6 N.D. -0.4
nitrogen source nitrogen source nitrate 5mM N.D. -0.1 -0.7 N.D. -0.2
nitrogen source nitrogen source nitrate 20mM N.D. -0.1 -0.7 N.D. -0.1
nitrogen source nitrogen source Ammonium chloride 20mM N.D. -0.1 -0.7 N.D. -0.1
soil soil EcoFAB sample 2; outgrowth in LB N.D. -0.1 -0.7 N.D. -0.1
carbon source Valeric (C) N.D. -0.1 -0.4 N.D. -0.3
nitrogen source nitrogen source nitrate 20mM N.D. -0.2 -0.6 N.D. +0.1
nitrogen source nitrogen source Ammonium chloride 20mM N.D. -0.1 -0.7 N.D. +0.1
micoeukaryotes Dictyostellum sp.mixed culture-2 N.D. -0.0 -0.8 N.D. +0.1
soil soil sample 6; outgrowth in LB N.D. +0.0 -0.5 N.D. -0.2
nitrogen source nitrogen source nitrate 5mM N.D. -0.1 -0.8 N.D. +0.2
carbon source Glycerol (C) N.D. +0.0 -0.7 N.D. -0.0
carbon source Octanoic (C) N.D. +0.1 -0.2 N.D. -0.5
carbon source D-Glucose (C) N.D. +0.1 -0.5 N.D. -0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -0.1 -0.6 N.D. +0.1
rhizosphere rhizosphere sample 4; outgrowth in LB N.D. -0.2 -0.5 N.D. +0.1
carbon source 1,2-Propanediol (C) N.D. +0.1 -0.6 N.D. +0.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -0.1 -0.6 N.D. +0.3
no_plant_soil no_plant_soil sample 3; outgrowth in LB N.D. -0.0 -0.6 N.D. +0.3
rhizosphere rhizosphere sample 3; outgrowth in LB N.D. -0.3 -0.1 N.D. +0.3
carbon source acetate (C) N.D. -0.2 +0.3 N.D. -0.3
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB N.D. -0.1 -0.4 N.D. +0.5
root root EcoFAB sample 1; outgrowth in LB N.D. -0.0 -0.3 N.D. +0.4
rhizosphere rhizosphere sample 2; outgrowth in LB N.D. -0.2 +0.4 N.D. -0.1
rhizosphere rhizosphere sample 9; outgrowth in LB N.D. +0.0 +0.5 N.D. -0.2
carbon source Heptanoic (C) N.D. +0.2 +0.5 N.D. -0.0
remove
ABZR87_RS09400
plot		 remove
ABZR87_RS09410
plot		 remove
ABZR87_RS09415		 remove
ABZR87_RS09420
plot		 remove
ABZR87_RS09425
plot