Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS09300 and ABZR87_RS09305 overlap by 4 nucleotidesABZR87_RS09305 and ABZR87_RS09310 are separated by 233 nucleotidesABZR87_RS09310 and ABZR87_RS09315 are separated by 7 nucleotidesABZR87_RS09315 and ABZR87_RS09320 are separated by 10 nucleotides ABZR87_RS09300: ABZR87_RS09300 - hypothetical protein, at 1,969,920 to 1,971,035 _RS09300 ABZR87_RS09305: ABZR87_RS09305 - purine nucleoside permease, at 1,971,032 to 1,972,081 _RS09305 ABZR87_RS09310: ABZR87_RS09310 - TonB-dependent siderophore receptor, at 1,972,315 to 1,974,423 _RS09310 ABZR87_RS09315: ABZR87_RS09315 - slipin family protein, at 1,974,431 to 1,975,189 _RS09315 ABZR87_RS09320: ABZR87_RS09320 - nodulation protein NfeD, at 1,975,200 to 1,976,579 _RS09320
Group Condition ABZR87_RS09300 ABZR87_RS09305 ABZR87_RS09310 ABZR87_RS09315 ABZR87_RS09320
root root sample 6; outgrowth in LB -0.2 -0.1 -0.0 -0.3 -0.4
micoeukaryotes Acanthamoeba sp., muxed culture-1 -0.0 -0.1 -0.1 -0.3 -0.2
carbon source 4-Hydroxybenzoic Acid (C) +0.2 -0.2 -0.1 -0.2 -0.2
soil soil EcoFAB sample 2; outgrowth in LB -0.0 -0.1 -0.0 -0.4 +0.2
rhizosphere rhizosphere sample 3; outgrowth in LB +0.4 -0.4 +0.2 -0.6 +0.1
root root EcoFAB sample 2; outgrowth in LB +0.1 +0.1 -0.1 -0.3 -0.1
soil soil EcoFAB sample 1; outgrowth in LB -0.4 +0.1 +0.1 +0.6 -0.7
carbon source Heptanoic (C) +0.2 -0.2 -0.0 -0.2 -0.1
carbon source butyrate (C) -0.1 -0.3 +0.0 +0.2 +0.0
rhizosphere rhizosphere sample 6; outgrowth in LB -0.0 -0.1 +0.2 -0.4 +0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.1 -0.3 -0.0 +0.5 -0.2
rhizosphere rhizosphere sample 9; outgrowth in LB -0.1 -0.2 -0.0 +0.3 +0.1
rhizosphere rhizosphere sample 7; outgrowth in LB +0.1 -0.3 +0.0 +0.5 -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.0 -0.2 +0.0 -0.2 +0.5
nitrogen source nitrogen source nitrite 0.5mM +0.0 +0.2 -0.1 +0.4 -0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.2 +0.3 +0.0 -0.3 +0.1
soil soil sample 3; outgrowth in LB +0.2 +0.2 -0.1 -0.2 +0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.5 -0.0 -0.1 -0.2 +0.2
rhizosphere rhizosphere sample 1; outgrowth in LB +0.3 +0.1 +0.1 -0.1 -0.1
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.5 +0.2 +0.1 -0.2 -0.2
carbon source Octanoic (C) +0.7 +0.1 -0.1 -0.0 -0.2
carbon source L-Glutamic (C) +0.9 -0.0 +0.2 -0.0 -0.4
root root sample 4; outgrowth in LB +0.2 -0.1 +0.0 +0.3 +0.2
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB +0.3 +0.5 +0.2 -0.3 +0.1
carbon source Protocatechuic Acid (C) +0.3 -0.0 +0.2 +0.2 +0.1
carbon source succinate (C) +0.2 +0.1 -0.0 +0.5 +0.1
carbon source Dodecandioic (C) +0.4 +0.1 +0.1 +0.2 +0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.8 +0.1 +0.0 -0.3 +0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.0 +0.1 +0.2 +0.6 +0.0
carbon source Octanoic (C) +0.2 +0.0 +0.1 +0.5 +0.1
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ABZR87_RS09305
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