Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS09285 and ABZR87_RS09290 are separated by 206 nucleotidesABZR87_RS09290 and ABZR87_RS09295 are separated by 78 nucleotidesABZR87_RS09295 and ABZR87_RS09300 are separated by 411 nucleotidesABZR87_RS09300 and ABZR87_RS09305 overlap by 4 nucleotides ABZR87_RS09285: ABZR87_RS09285 - CaiB/BaiF CoA-transferase family protein, at 1,963,540 to 1,964,760 _RS09285 ABZR87_RS09290: ABZR87_RS09290 - alanine--tRNA ligase, at 1,964,967 to 1,967,609 _RS09290 ABZR87_RS09295: ABZR87_RS09295 - glycosyl transferase, at 1,967,688 to 1,969,508 _RS09295 ABZR87_RS09300: ABZR87_RS09300 - hypothetical protein, at 1,969,920 to 1,971,035 _RS09300 ABZR87_RS09305: ABZR87_RS09305 - purine nucleoside permease, at 1,971,032 to 1,972,081 _RS09305
Group Condition ABZR87_RS09285 ABZR87_RS09290 ABZR87_RS09295 ABZR87_RS09300 ABZR87_RS09305
rhizosphere rhizosphere sample 9; outgrowth in LB -0.3 N.D. -0.2 -0.1 -0.2
root root sample 5; outgrowth in LB -0.4 N.D. -0.2 +0.2 -0.3
micoeukaryotes C.elegans, mixed culture-2 -0.2 N.D. -0.1 -0.3 -0.2
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB -0.3 N.D. -0.2 -0.1 +0.0
carbon source Disodium Glutarate (C) -0.4 N.D. -0.0 +0.1 -0.1
carbon source Protocatechuic Acid (C) -0.6 N.D. -0.1 +0.4 -0.2
micoeukaryotes Acanthamoeba sp., muxed culture-2 -0.1 N.D. +0.2 -0.3 -0.2
rhizosphere rhizosphere EcoFAB sample 2; outgrowth in LB -0.4 N.D. +0.2 -0.1 -0.1
root root EcoFAB sample 2; outgrowth in LB -0.5 N.D. +0.0 +0.1 +0.1
carbon source Octanoic (C) -0.2 N.D. -0.2 +0.2 +0.0
root root sample 6; outgrowth in LB -0.1 N.D. +0.3 -0.2 -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.2 N.D. +0.3 -0.3 +0.0
soil soil sample 4; outgrowth in LB +0.2 N.D. -0.3 +0.2 -0.1
soil soil EcoFAB sample 1; outgrowth in LB -0.1 N.D. +0.4 -0.4 +0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.1 N.D. +0.3 -0.1 -0.3
rhizosphere rhizosphere sample 3; outgrowth in LB -0.1 N.D. +0.1 +0.4 -0.4
carbon source Heptanoic (C) -0.0 N.D. +0.2 +0.2 -0.2
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.5 N.D. +0.3 +0.5 +0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.2 N.D. +0.3 +0.2 +0.3
carbon source Sebacic (C) -0.2 N.D. +0.5 +0.2 +0.1
carbon source Azelaic (C) +0.3 N.D. +0.3 +0.1 -0.0
carbon source L-Glutamic (C) -0.3 N.D. -0.0 +0.9 -0.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.1 N.D. +0.1 +0.5 -0.0
soil soil sample 6; outgrowth in LB +0.0 N.D. +0.2 +0.2 +0.3
carbon source Dodecandioic (C) +0.1 N.D. +0.1 +0.4 +0.1
soil soil sample 3; outgrowth in LB +0.2 N.D. +0.1 +0.2 +0.2
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB -0.0 N.D. +0.2 +0.3 +0.5
carbon source Octanoic (C) +0.1 N.D. +0.2 +0.7 +0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.5 N.D. +0.7 +0.1 -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.2 N.D. +0.0 +0.8 +0.1
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