Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS09230 and ABZR87_RS09235 overlap by 4 nucleotidesABZR87_RS09235 and ABZR87_RS09240 are separated by 61 nucleotidesABZR87_RS09240 and ABZR87_RS09245 are separated by 88 nucleotidesABZR87_RS09245 and ABZR87_RS09250 are separated by 16 nucleotides ABZR87_RS09230: ABZR87_RS09230 - DUF2339 domain-containing protein, at 1,951,145 to 1,954,036 _RS09230 ABZR87_RS09235: ABZR87_RS09235 - DUF3999 domain-containing protein, at 1,954,033 to 1,955,355 _RS09235 ABZR87_RS09240: ABZR87_RS09240 - MAPEG family protein, at 1,955,417 to 1,955,800 _RS09240 ABZR87_RS09245: ABZR87_RS09245 - RNA-binding S4 domain-containing protein, at 1,955,889 to 1,956,110 _RS09245 ABZR87_RS09250: ABZR87_RS09250 - YceI family protein, at 1,956,127 to 1,956,690 _RS09250
Group Condition ABZR87_RS09230 ABZR87_RS09235 ABZR87_RS09240 ABZR87_RS09245 ABZR87_RS09250
rhizosphere rhizosphere sample 1; outgrowth in LB +0.1 -1.1 +0.1 N.D. N.D.
carbon source Protocatechuic Acid (C) +0.1 -0.3 -0.7 N.D. N.D.
nitrogen source nitrogen source nitrite 5mM -0.0 -0.7 -0.1 N.D. N.D.
rhizosphere rhizosphere sample 8; outgrowth in LB +0.1 -0.3 -0.5 N.D. N.D.
root root EcoFAB sample 1; outgrowth in LB +0.1 -0.5 -0.3 N.D. N.D.
rhizosphere rhizosphere sample 9; outgrowth in LB -0.1 -0.3 -0.4 N.D. N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.1 -0.5 -0.1 N.D. N.D.
no_plant_rhizosphere no_plant_rhizosphere sample 1; outgrowth in LB -0.1 -0.6 +0.1 N.D. N.D.
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB -0.0 -0.6 +0.1 N.D. N.D.
root root sample 5; outgrowth in LB -0.0 -0.7 +0.2 N.D. N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.1 -0.6 +0.1 N.D. N.D.
micoeukaryotes Dictyostellum sp.mixed culture-2 +0.1 +0.0 -0.5 N.D. N.D.
carbon source Octanoic (C) +0.3 -0.6 -0.1 N.D. N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.2 -0.5 +0.1 N.D. N.D.
carbon source Trans-2-methyl-2-butenoic (C) +0.0 -0.4 +0.2 N.D. N.D.
rhizosphere rhizosphere sample 3; outgrowth in LB +0.2 +0.2 -0.6 N.D. N.D.
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.2 -0.1 -0.3 N.D. N.D.
carbon source propionate (C) +0.1 -0.4 +0.2 N.D. N.D.
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB +0.2 -0.2 +0.2 N.D. N.D.
rhizosphere rhizosphere sample 7; outgrowth in LB +0.1 -0.2 +0.4 N.D. N.D.
soil soil EcoFAB sample 1; outgrowth in LB +0.1 +0.6 -0.3 N.D. N.D.
root root sample 6; outgrowth in LB +0.1 -0.2 +0.5 N.D. N.D.
carbon source Octanoic (C) +0.1 -0.4 +0.9 N.D. N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.2 -0.1 +0.5 N.D. N.D.
nitrogen source nitrogen source Ammonium chloride 20mM +0.0 +0.3 +0.3 N.D. N.D.
nitrogen source nitrogen source nitrite 1mM -0.0 +0.5 +0.2 N.D. N.D.
nitrogen source nitrogen source nitrate 5mM +0.2 +0.5 -0.0 N.D. N.D.
soil soil sample 6; outgrowth in LB +0.1 +0.2 +0.5 N.D. N.D.
nitrogen source nitrogen source nitrate 20mM +0.2 +0.3 +0.3 N.D. N.D.
nitrogen source nitrogen source nitrite 0.5mM +0.3 +0.4 +0.3 N.D. N.D.
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