Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS09040 and ABZR87_RS09045 are separated by 101 nucleotidesABZR87_RS09045 and ABZR87_RS09050 are separated by 89 nucleotidesABZR87_RS09050 and ABZR87_RS09055 are separated by 11 nucleotidesABZR87_RS09055 and ABZR87_RS09060 are separated by 1 nucleotides ABZR87_RS09040: ABZR87_RS09040 - nucleoside 2-deoxyribosyltransferase, at 1,916,665 to 1,917,150 _RS09040 ABZR87_RS09045: ABZR87_RS09045 - acyl-CoA dehydrogenase family protein, at 1,917,252 to 1,918,424 _RS09045 ABZR87_RS09050: ABZR87_RS09050 - TauD/TfdA family dioxygenase, at 1,918,514 to 1,919,425 _RS09050 ABZR87_RS09055: ABZR87_RS09055 - NUDIX hydrolase, at 1,919,437 to 1,919,898 _RS09055 ABZR87_RS09060: ABZR87_RS09060 - iron export ABC transporter permease subunit FetB, at 1,919,900 to 1,920,709 _RS09060
Group Condition ABZR87_RS09040 ABZR87_RS09045 ABZR87_RS09050 ABZR87_RS09055 ABZR87_RS09060
rhizosphere rhizosphere sample 9; outgrowth in LB -0.1 -0.2 -0.0 -0.5 -0.6
nitrogen source nitrogen source nitrite 1mM -0.2 -0.2 -0.1 -0.4 -0.4
root root sample 6; outgrowth in LB -0.1 -0.2 -0.0 -0.5 -0.4
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.2 -0.2 -0.1 +0.1 -0.5
no_plant_rhizosphere no_plant_rhizosphere sample 1; outgrowth in LB -0.1 -0.4 +0.0 -0.5 +0.1
carbon source propionate (C) -0.3 +0.1 -0.1 -0.2 -0.3
nitrogen source nitrogen source nitrite 0.5mM +0.1 -0.2 -0.3 -0.0 -0.4
carbon source L-Glutamic (C) +0.2 +0.0 -0.3 -0.1 -0.6
carbon source Azelaic (C) -0.3 +0.1 -0.4 -0.2 -0.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.2 +0.2 +0.2 -0.1 -0.6
rhizosphere rhizosphere sample 3; outgrowth in LB -0.6 -0.0 +0.3 -0.3 +0.1
nitrogen source nitrogen source nitrate 5mM +0.3 -0.3 -0.3 +0.1 -0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.3 +0.4 +0.0 -0.7 +0.3
carbon source Octanoic (C) +0.1 +0.4 -0.2 -0.8 +0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.4 +0.2 +0.3 +0.1 -0.4
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.8 +0.3 +0.1 -0.2 +0.3
carbon source Protocatechuic Acid (C) +0.4 -0.1 +0.1 +0.1 -0.6
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.2 -0.3 -0.1 +0.5 -0.0
soil soil EcoFAB sample 1; outgrowth in LB -0.0 -0.2 +0.3 -0.5 +0.5
micoeukaryotes C.elegans, mixed culture-2 -0.3 +0.3 +0.0 +0.2 -0.2
carbon source Sebacic (C) -0.1 +0.4 -0.3 -0.1 +0.3
root root sample 5; outgrowth in LB +0.2 -0.0 -0.4 +0.3 +0.2
soil soil sample 3; outgrowth in LB -0.2 +0.3 +0.3 -0.1 +0.1
carbon source Octanoic (C) -0.4 +0.2 +0.1 -0.2 +0.8
carbon source propionate (C) -0.2 -0.2 +0.2 +0.3 +0.4
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.4 +0.1 +0.2 +0.2 +0.4
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.3 +0.2 +0.4 -0.0 +0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.1 +0.3 +0.9 -0.0 -0.4
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.3 +0.2 +0.1 +0.7 -0.3
carbon source 4-Hydroxybenzoic Acid (C) +0.1 +0.6 +0.2 +0.1 +0.2
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ABZR87_RS09040
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ABZR87_RS09045
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ABZR87_RS09055
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