Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS09035 and ABZR87_RS09040 overlap by 4 nucleotidesABZR87_RS09040 and ABZR87_RS09045 are separated by 101 nucleotidesABZR87_RS09045 and ABZR87_RS09050 are separated by 89 nucleotidesABZR87_RS09050 and ABZR87_RS09055 are separated by 11 nucleotides ABZR87_RS09035: ABZR87_RS09035 - LacI family DNA-binding transcriptional regulator, at 1,915,604 to 1,916,668 _RS09035 ABZR87_RS09040: ABZR87_RS09040 - nucleoside 2-deoxyribosyltransferase, at 1,916,665 to 1,917,150 _RS09040 ABZR87_RS09045: ABZR87_RS09045 - acyl-CoA dehydrogenase family protein, at 1,917,252 to 1,918,424 _RS09045 ABZR87_RS09050: ABZR87_RS09050 - TauD/TfdA family dioxygenase, at 1,918,514 to 1,919,425 _RS09050 ABZR87_RS09055: ABZR87_RS09055 - NUDIX hydrolase, at 1,919,437 to 1,919,898 _RS09055
Group Condition ABZR87_RS09035 ABZR87_RS09040 ABZR87_RS09045 ABZR87_RS09050 ABZR87_RS09055
carbon source Octanoic (C) -2.1 -0.4 +0.2 +0.1 -0.2
carbon source Octanoic (C) -1.5 +0.1 +0.4 -0.2 -0.8
carbon source butyrate (C) -1.5 -0.2 +0.1 -0.1 -0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -2.1 -0.3 +0.2 +0.4 -0.0
soil soil EcoFAB sample 1; outgrowth in LB -1.0 -0.0 -0.2 +0.3 -0.5
carbon source Dodecandioic (C) -1.4 -0.2 -0.1 -0.1 +0.2
carbon source Azelaic (C) -0.8 -0.3 +0.1 -0.4 -0.2
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.9 -0.8 +0.3 +0.1 -0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.8 -0.2 -0.2 -0.1 +0.1
carbon source Protocatechuic Acid (C) -1.2 -0.1 +0.2 -0.1 +0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -1.0 -0.2 -0.3 -0.1 +0.5
carbon source propionate (C) -1.1 -0.2 -0.2 +0.2 +0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -1.1 -0.4 +0.2 +0.3 +0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.3 -0.3 +0.4 +0.0 -0.7
carbon source Sebacic (C) -0.6 -0.1 +0.4 -0.3 -0.1
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB -0.9 +0.4 -0.2 +0.0 +0.0
carbon source Heptanoic (C) -0.9 -0.1 +0.0 +0.1 +0.4
root root sample 6; outgrowth in LB +0.8 -0.1 -0.2 -0.0 -0.5
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.8 +0.3 +0.2 +0.1 +0.7
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.7 +0.1 +0.3 +0.9 -0.0
no_plant_rhizosphere no_plant_rhizosphere sample 1; outgrowth in LB +1.6 -0.1 -0.4 +0.0 -0.5
rhizosphere rhizosphere sample 9; outgrowth in LB +1.6 -0.1 -0.2 -0.0 -0.5
rhizosphere rhizosphere sample 1; outgrowth in LB +1.3 -0.1 -0.1 -0.1 -0.0
rhizosphere rhizosphere sample 7; outgrowth in LB +1.3 -0.2 +0.0 -0.0 -0.1
rhizosphere rhizosphere sample 2; outgrowth in LB +1.2 -0.2 +0.1 -0.0 -0.0
rhizosphere rhizosphere sample 8; outgrowth in LB +1.4 +0.0 -0.0 -0.2 -0.1
rhizosphere rhizosphere sample 3; outgrowth in LB +1.9 -0.6 -0.0 +0.3 -0.3
root root sample 4; outgrowth in LB +1.5 +0.1 +0.1 -0.1 +0.1
no_plant_soil no_plant_soil sample 3; outgrowth in LB +1.6 +0.1 +0.2 +0.1 -0.0
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB +3.0 -0.1 -0.2 +0.1 -0.0
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ABZR87_RS09035
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