Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS09020 and ABZR87_RS09025 are separated by 58 nucleotidesABZR87_RS09025 and ABZR87_RS09030 are separated by 4 nucleotidesABZR87_RS09030 and ABZR87_RS09035 are separated by 79 nucleotidesABZR87_RS09035 and ABZR87_RS09040 overlap by 4 nucleotides ABZR87_RS09020: ABZR87_RS09020 - sugar kinase, at 1,912,217 to 1,913,206 _RS09020 ABZR87_RS09025: ABZR87_RS09025 - MFS transporter, at 1,913,265 to 1,914,545 _RS09025 ABZR87_RS09030: ABZR87_RS09030 - NAD(P)-dependent oxidoreductase, at 1,914,550 to 1,915,524 _RS09030 ABZR87_RS09035: ABZR87_RS09035 - LacI family DNA-binding transcriptional regulator, at 1,915,604 to 1,916,668 _RS09035 ABZR87_RS09040: ABZR87_RS09040 - nucleoside 2-deoxyribosyltransferase, at 1,916,665 to 1,917,150 _RS09040
Group Condition ABZR87_RS09020 ABZR87_RS09025 ABZR87_RS09030 ABZR87_RS09035 ABZR87_RS09040
nitrogen source nitrogen source nitrate 20mM -0.1 -0.1 -4.2 +0.2 -0.1
nitrogen source nitrogen source nitrite 5mM -0.0 -0.2 -3.4 +0.2 -0.2
carbon source Octanoic (C) -0.5 -0.2 +0.3 -2.1 -0.4
nitrogen source nitrogen source nitrite 5mM -0.1 -0.1 -3.0 +0.5 +0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.4 -0.2 -0.4 -2.1 -0.3
nitrogen source nitrogen source Ammonium chloride 20mM -0.1 -0.2 -2.0 -0.2 -0.1
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.2 -0.1 -0.5 -0.9 -0.8
nitrogen source nitrogen source Ammonium chloride 20mM -0.2 -0.1 -2.0 +0.2 -0.2
nitrogen source nitrogen source nitrate 20mM -0.1 +0.0 -1.9 -0.1 -0.2
nitrogen source nitrogen source nitrate 5mM +0.2 -0.1 -2.8 +0.2 +0.3
carbon source butyrate (C) -0.4 -0.1 +0.0 -1.5 -0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.0 -0.3 -0.0 -1.1 -0.4
soil soil EcoFAB sample 1; outgrowth in LB +0.1 -0.2 -0.7 -1.0 -0.0
nitrogen source nitrogen source nitrate 5mM -0.3 +0.0 -1.7 +0.1 +0.1
carbon source Octanoic (C) +0.1 -0.0 -0.2 -1.5 +0.1
nitrogen source nitrogen source nitrite 1mM +0.1 -0.1 -1.5 +0.1 -0.2
carbon source Dodecandioic (C) +0.0 -0.2 +0.3 -1.4 -0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.3 -0.1 -0.8 -0.8 +0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.3 +0.2 -0.3 -1.0 -0.2
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB -0.3 +0.0 -0.8 +0.9 +0.2
no_plant_rhizosphere no_plant_rhizosphere sample 1; outgrowth in LB -0.1 -0.2 -0.4 +1.6 -0.1
rhizosphere rhizosphere sample 7; outgrowth in LB -0.1 +0.2 -0.2 +1.3 -0.2
rhizosphere rhizosphere sample 1; outgrowth in LB +0.1 +0.0 -0.4 +1.3 -0.1
rhizosphere rhizosphere sample 8; outgrowth in LB +0.1 +0.0 -0.3 +1.4 +0.0
root root EcoFAB sample 2; outgrowth in LB +0.3 -0.0 +1.2 -0.2 +0.2
no_plant_soil no_plant_soil sample 3; outgrowth in LB +0.0 -0.2 +0.1 +1.6 +0.1
root root sample 4; outgrowth in LB +0.2 -0.0 -0.1 +1.5 +0.1
rhizosphere rhizosphere sample 3; outgrowth in LB -0.3 -0.1 +0.9 +1.9 -0.6
rhizosphere rhizosphere sample 9; outgrowth in LB -0.1 -0.1 +0.4 +1.6 -0.1
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB -0.2 -0.2 -0.2 +3.0 -0.1
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ABZR87_RS09020
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ABZR87_RS09025
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