Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS08960 and ABZR87_RS08965 are separated by 69 nucleotidesABZR87_RS08965 and ABZR87_RS08970 overlap by 4 nucleotidesABZR87_RS08970 and ABZR87_RS08975 are separated by 12 nucleotidesABZR87_RS08975 and ABZR87_RS08980 are separated by 37 nucleotides ABZR87_RS08960: ABZR87_RS08960 - bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG, at 1,902,850 to 1,903,602 _RS08960 ABZR87_RS08965: ABZR87_RS08965 - tol-pal system-associated acyl-CoA thioesterase, at 1,903,672 to 1,904,076 _RS08965 ABZR87_RS08970: ABZR87_RS08970 - protein TolQ, at 1,904,073 to 1,904,765 _RS08970 ABZR87_RS08975: ABZR87_RS08975 - protein TolR, at 1,904,778 to 1,905,212 _RS08975 ABZR87_RS08980: ABZR87_RS08980 - cell envelope integrity protein TolA, at 1,905,250 to 1,906,278 _RS08980
Group Condition ABZR87_RS08960 ABZR87_RS08965 ABZR87_RS08970 ABZR87_RS08975 ABZR87_RS08980
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB +0.0 -0.0 -4.0 N.D. -4.8
soil soil sample 8; outgrowth in LB +0.0 -0.5 -3.4 N.D. -3.8
soil soil sample 3; outgrowth in LB -0.2 -0.0 -3.4 N.D. -3.6
no_plant_soil no_plant_soil sample 2; outgrowth in LB +0.1 -0.3 -3.7 N.D. -3.2
soil soil EcoFAB sample 2; outgrowth in LB +0.1 -0.9 -3.9 N.D. -2.5
soil soil sample 6; outgrowth in LB -0.1 -0.3 -3.6 N.D. -3.0
soil soil sample 5; outgrowth in LB -0.2 +0.1 -4.0 N.D. -2.8
no_plant_soil no_plant_soil sample 1; outgrowth in LB -0.1 +0.0 -4.3 N.D. -2.5
no_plant_rhizosphere no_plant_rhizosphere sample 1; outgrowth in LB -0.0 -0.4 -3.6 N.D. -2.5
no_plant_soil no_plant_soil sample 3; outgrowth in LB -0.2 +0.2 -4.1 N.D. -2.4
rhizosphere rhizosphere sample 2; outgrowth in LB -0.1 -1.5 -2.2 N.D. -2.7
soil soil sample 2; outgrowth in LB -0.1 -0.2 -3.5 N.D. -2.7
rhizosphere rhizosphere sample 4; outgrowth in LB +0.0 -1.6 -2.6 N.D. -2.3
soil soil sample 4; outgrowth in LB +0.1 +0.0 -3.5 N.D. -3.0
root root EcoFAB sample 1; outgrowth in LB -0.0 -0.4 -3.2 N.D. -2.7
root root EcoFAB sample 2; outgrowth in LB -0.0 -0.4 -3.7 N.D. -1.8
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB +0.0 -0.1 -3.0 N.D. -2.8
rhizosphere rhizosphere sample 5; outgrowth in LB -0.2 -0.3 -2.9 N.D. -2.1
rhizosphere rhizosphere sample 7; outgrowth in LB -0.3 -0.4 -2.4 N.D. -2.2
carbon source Pimelic (C) +0.2 -0.6 -2.8 N.D. -2.1
rhizosphere rhizosphere sample 1; outgrowth in LB +0.1 -0.3 -2.7 N.D. -2.4
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB -0.0 -0.6 -2.5 N.D. -2.0
soil soil sample 9; outgrowth in LB -0.1 -0.2 -3.1 N.D. -1.7
rhizosphere rhizosphere EcoFAB sample 2; outgrowth in LB +0.1 +0.4 -3.2 N.D. -2.3
rhizosphere rhizosphere sample 8; outgrowth in LB -0.0 -0.7 -2.7 N.D. -1.6
soil soil sample 1; outgrowth in LB +0.1 -0.2 -2.7 N.D. -2.0
rhizosphere rhizosphere sample 6; outgrowth in LB -0.0 +0.0 -2.5 N.D. -2.3
carbon source Pimelic (C) -0.1 +0.2 -3.0 N.D. -1.9
soil soil EcoFAB sample 1; outgrowth in LB -0.0 +0.8 -3.3 N.D. -1.6
carbon source Lauric (C) +0.2 +0.6 -2.2 N.D. -2.1
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