Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS08950 and ABZR87_RS08955 are separated by 134 nucleotidesABZR87_RS08955 and ABZR87_RS08960 are separated by 402 nucleotidesABZR87_RS08960 and ABZR87_RS08965 are separated by 69 nucleotidesABZR87_RS08965 and ABZR87_RS08970 overlap by 4 nucleotides ABZR87_RS08950: ABZR87_RS08950 - transcriptional regulator NrdR, at 1,900,616 to 1,901,065 _RS08950 ABZR87_RS08955: ABZR87_RS08955 - serine hydroxymethyltransferase, at 1,901,200 to 1,902,447 _RS08955 ABZR87_RS08960: ABZR87_RS08960 - bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG, at 1,902,850 to 1,903,602 _RS08960 ABZR87_RS08965: ABZR87_RS08965 - tol-pal system-associated acyl-CoA thioesterase, at 1,903,672 to 1,904,076 _RS08965 ABZR87_RS08970: ABZR87_RS08970 - protein TolQ, at 1,904,073 to 1,904,765 _RS08970
Group Condition ABZR87_RS08950 ABZR87_RS08955 ABZR87_RS08960 ABZR87_RS08965 ABZR87_RS08970
soil soil EcoFAB sample 2; outgrowth in LB -2.1 N.D. +0.1 -0.9 -3.9
root root EcoFAB sample 2; outgrowth in LB -1.8 N.D. -0.0 -0.4 -3.7
no_plant_soil no_plant_soil sample 3; outgrowth in LB -1.6 N.D. -0.2 +0.2 -4.1
no_plant_soil no_plant_soil sample 1; outgrowth in LB -1.1 N.D. -0.1 +0.0 -4.3
root root EcoFAB sample 1; outgrowth in LB -1.4 N.D. -0.0 -0.4 -3.2
rhizosphere rhizosphere sample 4; outgrowth in LB -0.7 N.D. +0.0 -1.6 -2.6
soil soil sample 2; outgrowth in LB -0.9 N.D. -0.1 -0.2 -3.5
no_plant_soil no_plant_soil sample 2; outgrowth in LB -0.5 N.D. +0.1 -0.3 -3.7
rhizosphere rhizosphere sample 8; outgrowth in LB -1.1 N.D. -0.0 -0.7 -2.7
soil soil sample 8; outgrowth in LB -0.6 N.D. +0.0 -0.5 -3.4
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB -1.2 N.D. -0.0 -0.6 -2.5
soil soil sample 3; outgrowth in LB -0.6 N.D. -0.2 -0.0 -3.4
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -1.1 N.D. +0.0 -0.8 -2.3
root root sample 6; outgrowth in LB -1.8 N.D. -0.2 -0.0 -2.1
soil soil sample 6; outgrowth in LB -0.1 N.D. -0.1 -0.3 -3.6
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB -0.1 N.D. +0.0 -0.0 -4.0
soil soil sample 5; outgrowth in LB +0.0 N.D. -0.2 +0.1 -4.0
no_plant_rhizosphere no_plant_rhizosphere sample 1; outgrowth in LB +0.1 N.D. -0.0 -0.4 -3.6
soil soil sample 9; outgrowth in LB -0.5 N.D. -0.1 -0.2 -3.1
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB -0.9 N.D. +0.0 -0.1 -3.0
rhizosphere rhizosphere sample 2; outgrowth in LB -0.2 N.D. -0.1 -1.5 -2.2
rhizosphere rhizosphere sample 9; outgrowth in LB -1.3 N.D. +0.1 -0.4 -2.2
soil soil sample 4; outgrowth in LB -0.4 N.D. +0.1 +0.0 -3.5
rhizosphere rhizosphere EcoFAB sample 2; outgrowth in LB -0.4 N.D. +0.1 +0.4 -3.2
soil soil EcoFAB sample 1; outgrowth in LB -0.2 N.D. -0.0 +0.8 -3.3
carbon source Lauric (C) -1.2 N.D. +0.2 +0.6 -2.2
carbon source Octanoic (C) -2.7 N.D. -0.1 -0.5 +1.6
carbon source Octanoic (C) -1.9 N.D. +0.1 -1.2 +1.5
phage Ra3_1 +2.5 N.D. +0.0 -0.8 +1.4
phage Ra1_0.1 +2.4 N.D. -0.3 +0.1 +1.3
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ABZR87_RS08950
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ABZR87_RS08955
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ABZR87_RS08970
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