Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 129 experiments or choose conditions or try the comparative fitness browser

500 ntABZR87_RS08945 and ABZR87_RS08950 are separated by 170 nucleotidesABZR87_RS08950 and ABZR87_RS08955 are separated by 134 nucleotidesABZR87_RS08955 and ABZR87_RS08960 are separated by 402 nucleotidesABZR87_RS08960 and ABZR87_RS08965 are separated by 69 nucleotides ABZR87_RS08945: ABZR87_RS08945 - type IV pilus modification protein PilV, at 1,899,810 to 1,900,445 _RS08945 ABZR87_RS08950: ABZR87_RS08950 - transcriptional regulator NrdR, at 1,900,616 to 1,901,065 _RS08950 ABZR87_RS08955: ABZR87_RS08955 - serine hydroxymethyltransferase, at 1,901,200 to 1,902,447 _RS08955 ABZR87_RS08960: ABZR87_RS08960 - bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG, at 1,902,850 to 1,903,602 _RS08960 ABZR87_RS08965: ABZR87_RS08965 - tol-pal system-associated acyl-CoA thioesterase, at 1,903,672 to 1,904,076 _RS08965
Group Condition ABZR87_RS08945 ABZR87_RS08950 ABZR87_RS08955 ABZR87_RS08960 ABZR87_RS08965
carbon source Octanoic (C) +0.2 -2.7 N.D. -0.1 -0.5
carbon source Octanoic (C) +0.3 -1.9 N.D. +0.1 -1.2
rhizosphere rhizosphere sample 4; outgrowth in LB -0.1 -0.7 N.D. +0.0 -1.6
root root sample 6; outgrowth in LB -0.2 -1.8 N.D. -0.2 -0.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.1 -1.1 N.D. +0.0 -0.8
rhizosphere rhizosphere sample 8; outgrowth in LB -0.2 -1.1 N.D. -0.0 -0.7
soil soil EcoFAB sample 2; outgrowth in LB +0.9 -2.1 N.D. +0.1 -0.9
carbon source Dodecandioic (C) -0.1 -1.4 N.D. -0.3 -0.1
root root EcoFAB sample 2; outgrowth in LB +0.4 -1.8 N.D. -0.0 -0.4
rhizosphere rhizosphere sample 2; outgrowth in LB -0.0 -0.2 N.D. -0.1 -1.5
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.1 -1.2 N.D. +0.1 -0.7
carbon source 4-Hydroxybenzoic Acid (C) -0.3 -1.0 N.D. -0.0 -0.3
carbon source Sebacic (C) +0.5 -1.9 N.D. -0.1 -0.2
root root EcoFAB sample 1; outgrowth in LB +0.2 -1.4 N.D. -0.0 -0.4
carbon source Protocatechuic Acid (C) +0.2 -1.5 N.D. -0.2 -0.1
rhizosphere rhizosphere sample 9; outgrowth in LB +0.3 -1.3 N.D. +0.1 -0.4
no_plant_soil no_plant_soil sample 3; outgrowth in LB +0.1 -1.6 N.D. -0.2 +0.2
carbon source Dodecandioic (C) +0.2 -1.5 N.D. -0.1 +0.1
nitrogen source nitrogen source nitrite 0.5mM -0.2 -0.3 N.D. +0.2 -0.9
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.2 -1.0 N.D. +0.5 -0.4
root root sample 5; outgrowth in LB -0.5 +0.5 N.D. -0.1 -0.6
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB +1.3 -1.2 N.D. -0.0 -0.6
carbon source Lauric (C) -0.0 -1.2 N.D. +0.2 +0.6
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB +1.7 -0.9 N.D. +0.0 -0.1
no_plant_rhizosphere no_plant_rhizosphere sample 1; outgrowth in LB +1.2 +0.1 N.D. -0.0 -0.4
soil soil EcoFAB sample 1; outgrowth in LB +0.8 -0.2 N.D. -0.0 +0.8
phage Ra1_0.01 +2.0 +1.0 N.D. -0.1 -0.5
phage Ra3_0.1 +2.4 +0.8 N.D. +0.1 -0.1
phage Ra3_1 +6.1 +2.5 N.D. +0.0 -0.8
phage Ra1_0.1 +6.1 +2.4 N.D. -0.3 +0.1
remove
ABZR87_RS08945
plot		 remove
ABZR87_RS08950
plot		 remove
ABZR87_RS08955		 remove
ABZR87_RS08960
plot		 remove
ABZR87_RS08965
plot