Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS08875 and ABZR87_RS08880 are separated by 127 nucleotidesABZR87_RS08880 and ABZR87_RS08885 are separated by 6 nucleotidesABZR87_RS08885 and ABZR87_RS08890 are separated by 43 nucleotidesABZR87_RS08890 and ABZR87_RS08895 overlap by 13 nucleotides ABZR87_RS08875: ABZR87_RS08875 - bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II, at 1,885,434 to 1,886,573 _RS08875 ABZR87_RS08880: ABZR87_RS08880 - riboflavin synthase, at 1,886,701 to 1,887,354 _RS08880 ABZR87_RS08885: ABZR87_RS08885 - bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD, at 1,887,361 to 1,888,473 _RS08885 ABZR87_RS08890: ABZR87_RS08890 - GspH/FimT family pseudopilin, at 1,888,517 to 1,889,044 _RS08890 ABZR87_RS08895: ABZR87_RS08895 - prepilin-type N-terminal cleavage/methylation domain-containing protein, at 1,889,032 to 1,889,427 _RS08895
Group Condition ABZR87_RS08875 ABZR87_RS08880 ABZR87_RS08885 ABZR87_RS08890 ABZR87_RS08895
carbon source Octanoic (C) -4.9 N.D. N.D. -0.2 -0.2
carbon source Octanoic (C) -3.1 N.D. N.D. -0.7 -0.2
carbon source butyrate (C) -2.1 N.D. N.D. -0.4 -0.2
soil soil EcoFAB sample 1; outgrowth in LB -2.8 N.D. N.D. +0.1 +0.4
carbon source Hexanoic (C) -1.5 N.D. N.D. -0.2 +0.0
root root EcoFAB sample 2; outgrowth in LB -0.8 N.D. N.D. -0.5 -0.2
rhizosphere rhizosphere sample 9; outgrowth in LB -0.6 N.D. N.D. -0.5 -0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -1.4 N.D. N.D. +0.2 -0.2
carbon source Sebacic (C) -1.4 N.D. N.D. -0.2 +0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.8 N.D. N.D. -0.4 -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.6 N.D. N.D. -0.4 -0.1
no_plant_soil no_plant_soil sample 3; outgrowth in LB -1.3 N.D. N.D. +0.0 +0.1
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB -1.3 N.D. N.D. +0.2 +0.0
root root sample 4; outgrowth in LB -1.6 N.D. N.D. +0.3 +0.2
carbon source Lauric (C) -0.9 N.D. N.D. -0.0 -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -1.2 N.D. N.D. +0.0 +0.1
nitrogen source nitrogen source nitrite 0.5mM -1.3 N.D. N.D. +0.4 -0.0
carbon source Heptanoic (C) -1.0 N.D. N.D. +0.1 +0.1
soil soil EcoFAB sample 2; outgrowth in LB -1.1 N.D. N.D. +0.1 +0.1
carbon source 4-Hydroxybenzoic Acid (C) -1.1 N.D. N.D. +0.3 -0.0
carbon source Hexanoic (C) -0.9 N.D. N.D. +0.1 -0.0
carbon source Azelaic (C) -0.9 N.D. N.D. +0.1 -0.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.8 N.D. N.D. -0.2 +0.3
carbon source 1,2-Propanediol (C) -0.7 N.D. N.D. +0.2 -0.1
root root sample 6; outgrowth in LB -0.7 N.D. N.D. -0.2 +0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -1.0 N.D. N.D. +0.3 +0.2
nitrogen source nitrogen source nitrite 1mM -0.7 N.D. N.D. +0.0 +0.2
rhizosphere rhizosphere sample 2; outgrowth in LB -0.8 N.D. N.D. +0.4 +0.1
rhizosphere rhizosphere sample 4; outgrowth in LB +0.8 N.D. N.D. +0.2 +0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +1.4 N.D. N.D. -0.2 +0.3
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ABZR87_RS08880
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