Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS08865 and ABZR87_RS08870 are separated by 27 nucleotidesABZR87_RS08870 and ABZR87_RS08875 are separated by 90 nucleotidesABZR87_RS08875 and ABZR87_RS08880 are separated by 127 nucleotidesABZR87_RS08880 and ABZR87_RS08885 are separated by 6 nucleotides ABZR87_RS08865: ABZR87_RS08865 - transcription antitermination factor NusB, at 1,884,348 to 1,884,815 _RS08865 ABZR87_RS08870: ABZR87_RS08870 - 6,7-dimethyl-8-ribityllumazine synthase, at 1,884,843 to 1,885,343 _RS08870 ABZR87_RS08875: ABZR87_RS08875 - bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II, at 1,885,434 to 1,886,573 _RS08875 ABZR87_RS08880: ABZR87_RS08880 - riboflavin synthase, at 1,886,701 to 1,887,354 _RS08880 ABZR87_RS08885: ABZR87_RS08885 - bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD, at 1,887,361 to 1,888,473 _RS08885
Group Condition ABZR87_RS08865 ABZR87_RS08870 ABZR87_RS08875 ABZR87_RS08880 ABZR87_RS08885
carbon source Octanoic (C) N.D. N.D. -4.9 N.D. N.D.
carbon source Octanoic (C) N.D. N.D. -3.1 N.D. N.D.
soil soil EcoFAB sample 1; outgrowth in LB N.D. N.D. -2.8 N.D. N.D.
carbon source butyrate (C) N.D. N.D. -2.1 N.D. N.D.
root root sample 4; outgrowth in LB N.D. N.D. -1.6 N.D. N.D.
carbon source Hexanoic (C) N.D. N.D. -1.5 N.D. N.D.
carbon source Sebacic (C) N.D. N.D. -1.4 N.D. N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. N.D. -1.4 N.D. N.D.
no_plant_soil no_plant_soil sample 3; outgrowth in LB N.D. N.D. -1.3 N.D. N.D.
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB N.D. N.D. -1.3 N.D. N.D.
nitrogen source nitrogen source nitrite 0.5mM N.D. N.D. -1.3 N.D. N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. N.D. -1.2 N.D. N.D.
carbon source 4-Hydroxybenzoic Acid (C) N.D. N.D. -1.1 N.D. N.D.
soil soil EcoFAB sample 2; outgrowth in LB N.D. N.D. -1.1 N.D. N.D.
carbon source Heptanoic (C) N.D. N.D. -1.0 N.D. N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. N.D. -1.0 N.D. N.D.
carbon source Lauric (C) N.D. N.D. -0.9 N.D. N.D.
carbon source Azelaic (C) N.D. N.D. -0.9 N.D. N.D.
carbon source Hexanoic (C) N.D. N.D. -0.9 N.D. N.D.
carbon source Valeric (C) N.D. N.D. -0.8 N.D. N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. N.D. -0.8 N.D. N.D.
root root EcoFAB sample 2; outgrowth in LB N.D. N.D. -0.8 N.D. N.D.
rhizosphere rhizosphere sample 2; outgrowth in LB N.D. N.D. -0.8 N.D. N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. N.D. -0.8 N.D. N.D.
carbon source 1,2-Propanediol (C) N.D. N.D. -0.7 N.D. N.D.
nitrogen source nitrogen source nitrite 1mM N.D. N.D. -0.7 N.D. N.D.
root root sample 6; outgrowth in LB N.D. N.D. -0.7 N.D. N.D.
rhizosphere rhizosphere sample 5; outgrowth in LB N.D. N.D. +0.7 N.D. N.D.
rhizosphere rhizosphere sample 4; outgrowth in LB N.D. N.D. +0.8 N.D. N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. N.D. +1.4 N.D. N.D.
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