Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS08855 and ABZR87_RS08860 are separated by 75 nucleotidesABZR87_RS08860 and ABZR87_RS08865 are separated by 43 nucleotidesABZR87_RS08865 and ABZR87_RS08870 are separated by 27 nucleotidesABZR87_RS08870 and ABZR87_RS08875 are separated by 90 nucleotides ABZR87_RS08855: ABZR87_RS08855 - lytic transglycosylase domain-containing protein, at 1,881,854 to 1,883,044 _RS08855 ABZR87_RS08860: ABZR87_RS08860 - pyridoxal phosphate-dependent aminotransferase, at 1,883,120 to 1,884,304 _RS08860 ABZR87_RS08865: ABZR87_RS08865 - transcription antitermination factor NusB, at 1,884,348 to 1,884,815 _RS08865 ABZR87_RS08870: ABZR87_RS08870 - 6,7-dimethyl-8-ribityllumazine synthase, at 1,884,843 to 1,885,343 _RS08870 ABZR87_RS08875: ABZR87_RS08875 - bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II, at 1,885,434 to 1,886,573 _RS08875
Group Condition ABZR87_RS08855 ABZR87_RS08860 ABZR87_RS08865 ABZR87_RS08870 ABZR87_RS08875
carbon source Octanoic (C) -0.9 -0.1 N.D. N.D. -4.9
carbon source Octanoic (C) -0.5 -0.2 N.D. N.D. -3.1
carbon source Sebacic (C) -2.1 -0.1 N.D. N.D. -1.4
soil soil EcoFAB sample 1; outgrowth in LB -0.2 +0.0 N.D. N.D. -2.8
carbon source butyrate (C) -0.3 -0.1 N.D. N.D. -2.1
carbon source Heptanoic (C) -1.5 +0.0 N.D. N.D. -1.0
carbon source 4-Hydroxybenzoic Acid (C) -1.3 -0.1 N.D. N.D. -1.1
carbon source Heptanoic (C) -1.4 -0.3 N.D. N.D. -0.4
no_plant_soil no_plant_soil sample 3; outgrowth in LB -0.5 -0.1 N.D. N.D. -1.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.4 +0.0 N.D. N.D. -1.4
carbon source Azelaic (C) -0.9 +0.1 N.D. N.D. -0.9
carbon source Hexanoic (C) -0.3 +0.1 N.D. N.D. -1.5
soil soil EcoFAB sample 2; outgrowth in LB -0.3 -0.3 N.D. N.D. -1.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.6 +0.2 N.D. N.D. -1.2
nitrogen source nitrogen source nitrite 0.5mM -0.1 -0.1 N.D. N.D. -1.3
carbon source Dodecandioic (C) -1.1 +0.1 N.D. N.D. -0.5
carbon source Dodecandioic (C) -1.2 -0.1 N.D. N.D. -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.5 -0.0 N.D. N.D. -1.0
root root EcoFAB sample 2; outgrowth in LB -0.2 -0.3 N.D. N.D. -0.8
carbon source Valeric (C) -0.4 -0.0 N.D. N.D. -0.8
rhizosphere rhizosphere sample 3; outgrowth in LB -0.5 -0.4 N.D. N.D. -0.4
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.8 +0.2 N.D. N.D. -0.5
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.5 +0.2 N.D. N.D. -0.8
root root sample 4; outgrowth in LB +0.0 +0.5 N.D. N.D. -1.6
carbon source Hexanoic (C) -0.3 +0.2 N.D. N.D. -0.9
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB +0.2 +0.2 N.D. N.D. -1.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.7 +0.6 N.D. N.D. -0.8
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.6 +0.2 N.D. N.D. +0.6
rhizosphere rhizosphere sample 5; outgrowth in LB -0.4 +0.2 N.D. N.D. +0.7
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.5 +0.1 N.D. N.D. +1.4
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ABZR87_RS08855
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