Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS08835 and ABZR87_RS08840 are separated by 129 nucleotidesABZR87_RS08840 and ABZR87_RS08845 are separated by 80 nucleotidesABZR87_RS08845 and ABZR87_RS08850 are separated by 129 nucleotidesABZR87_RS08850 and ABZR87_RS08855 are separated by 537 nucleotides ABZR87_RS08835: ABZR87_RS08835 - hypothetical protein, at 1,875,186 to 1,875,899 _RS08835 ABZR87_RS08840: ABZR87_RS08840 - acetoacetate--CoA ligase, at 1,876,029 to 1,878,083 _RS08840 ABZR87_RS08845: ABZR87_RS08845 - NAD-dependent succinate-semialdehyde dehydrogenase, at 1,878,164 to 1,879,675 _RS08845 ABZR87_RS08850: ABZR87_RS08850 - 4-hydroxy-3-polyprenylbenzoate decarboxylase, at 1,879,805 to 1,881,316 _RS08850 ABZR87_RS08855: ABZR87_RS08855 - lytic transglycosylase domain-containing protein, at 1,881,854 to 1,883,044 _RS08855
Group Condition ABZR87_RS08835 ABZR87_RS08840 ABZR87_RS08845 ABZR87_RS08850 ABZR87_RS08855
carbon source Sebacic (C) +0.7 +0.1 -0.6 N.D. -2.1
carbon source 4-Hydroxybenzoic Acid (C) -0.1 -0.0 -0.2 N.D. -1.3
micoeukaryotes Dictyostellum sp.mixed culture-1 -0.1 -0.0 -0.5 N.D. -0.6
carbon source Heptanoic (C) +0.5 -0.0 -0.1 N.D. -1.5
carbon source Dodecandioic (C) +0.1 -0.1 +0.0 N.D. -1.1
micoeukaryotes Dictyostellum sp.mixed culture-2 -0.2 +0.0 +0.1 N.D. -0.9
carbon source Azelaic (C) +0.2 -0.0 -0.2 N.D. -0.9
carbon source Protocatechuic Acid (C) -0.3 +0.1 -0.1 N.D. -0.6
carbon source Heptanoic (C) +0.6 -0.1 +0.1 N.D. -1.4
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.5 +0.2 +0.3 N.D. -0.8
carbon source Octanoic (C) +0.4 -0.2 +0.1 N.D. -0.9
root root sample 5; outgrowth in LB -1.0 +0.1 +0.2 N.D. +0.1
no_plant_soil no_plant_soil sample 1; outgrowth in LB +0.2 +0.0 -0.3 N.D. -0.5
carbon source Dodecandioic (C) +0.4 +0.1 +0.3 N.D. -1.2
carbon source Valeric (C) +0.3 +0.1 -0.3 N.D. -0.4
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.0 -0.1 +0.5 N.D. -0.6
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.4 +0.2 -0.1 N.D. -0.6
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB -0.5 +0.1 +0.2 N.D. +0.2
root root EcoFAB sample 1; outgrowth in LB +0.1 +0.1 +0.5 N.D. -0.6
root root EcoFAB sample 2; outgrowth in LB +0.6 -0.2 -0.0 N.D. -0.2
rhizosphere rhizosphere sample 7; outgrowth in LB +0.5 +0.0 +0.0 N.D. -0.5
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.5 -0.0 +0.1 N.D. -0.5
rhizosphere rhizosphere sample 3; outgrowth in LB +0.4 -0.0 +0.3 N.D. -0.5
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.6 -0.0 +0.1 N.D. -0.5
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.2 +0.5 +0.7 N.D. -0.7
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.3 +0.4 +0.4 N.D. -0.2
carbon source Octanoic (C) +0.7 -0.0 +0.2 N.D. -0.5
carbon source D-Glucose (C) +0.5 +0.1 +0.3 N.D. -0.3
nitrogen source nitrogen source nitrite 0.5mM +0.6 +0.1 +0.3 N.D. -0.1
root root sample 6; outgrowth in LB +0.8 +0.1 +0.0 N.D. +0.2
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