Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS08800 and ABZR87_RS08805 are separated by 25 nucleotidesABZR87_RS08805 and ABZR87_RS08810 are separated by 86 nucleotidesABZR87_RS08810 and ABZR87_RS08815 are separated by 90 nucleotidesABZR87_RS08815 and ABZR87_RS08820 are separated by 352 nucleotides ABZR87_RS08800: ABZR87_RS08800 - NADH:flavin oxidoreductase/NADH oxidase, at 1,869,144 to 1,870,256 _RS08800 ABZR87_RS08805: ABZR87_RS08805 - tRNA (guanosine(46)-N7)-methyltransferase TrmB, at 1,870,282 to 1,871,055 _RS08805 ABZR87_RS08810: ABZR87_RS08810 - tRNA-Gly, at 1,871,142 to 1,871,215 _RS08810 ABZR87_RS08815: ABZR87_RS08815 - hypothetical protein, at 1,871,306 to 1,871,956 _RS08815 ABZR87_RS08820: ABZR87_RS08820 - Lrp/AsnC family transcriptional regulator, at 1,872,309 to 1,872,821 _RS08820
Group Condition ABZR87_RS08800 ABZR87_RS08805 ABZR87_RS08810 ABZR87_RS08815 ABZR87_RS08820
carbon source Octanoic (C) -1.5 -2.6 -1.7 +0.2 -0.0
carbon source Octanoic (C) -0.9 -2.1 -2.7 +0.2 +0.2
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB -0.1 -1.8 -1.0 +0.1 -0.4
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.1 -1.1 -1.1 -0.2 -0.4
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB -0.4 -1.4 -0.6 +0.2 -0.2
carbon source Sebacic (C) -0.7 -0.5 -0.8 -0.2 -0.1
soil soil EcoFAB sample 1; outgrowth in LB -0.1 -1.9 -0.1 -0.1 +0.2
soil soil EcoFAB sample 2; outgrowth in LB -0.3 -1.0 -0.5 -0.2 -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.6 -0.4 -0.2 -0.1 -0.4
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.4 -0.8 -0.4 -0.1 -0.0
carbon source Dodecandioic (C) -0.1 -0.7 -0.8 -0.1 +0.2
rhizosphere rhizosphere EcoFAB sample 2; outgrowth in LB +0.1 -1.2 -0.5 +0.2 +0.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.2 -0.8 -0.4 -0.2 -0.2
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB -0.4 -0.6 -0.5 +0.0 +0.1
rhizosphere rhizosphere sample 3; outgrowth in LB -0.3 -0.6 -0.6 +0.2 -0.1
carbon source Lauric (C) +0.2 -1.2 -0.5 +0.2 +0.0
carbon source butyrate (C) -0.0 -0.7 -0.4 +0.2 -0.3
root root EcoFAB sample 2; outgrowth in LB +0.3 -0.8 -0.5 -0.2 +0.1
no_plant_soil no_plant_soil sample 3; outgrowth in LB -0.3 -1.0 -0.1 +0.1 +0.1
carbon source Dodecandioic (C) +0.2 -0.8 -0.5 +0.1 -0.0
carbon source 4-Hydroxybenzoic Acid (C) +0.4 -0.9 -0.4 -0.1 -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -1.3 -0.2 -0.2 +0.4 +0.2
rhizosphere rhizosphere sample 2; outgrowth in LB +0.1 -0.8 -0.5 +0.2 -0.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.5 -0.3 -0.3 +0.3 +0.2
no_plant_rhizosphere no_plant_rhizosphere sample 1; outgrowth in LB -0.5 -0.5 +0.0 +0.3 +0.3
rhizosphere rhizosphere sample 1; outgrowth in LB -0.4 -0.5 -0.1 +0.3 +0.4
rhizosphere rhizosphere sample 7; outgrowth in LB +0.6 -0.5 -0.3 +0.1 -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.6 -0.6 -0.2 +0.2 +0.1
nitrogen source nitrogen source nitrate 5mM +0.6 +0.2 +0.5 -0.2 -0.0
nitrogen source nitrogen source nitrite 0.5mM +0.7 +0.4 +0.4 -0.3 +0.3
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ABZR87_RS08805
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