Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 129 experiments or choose conditions or try the comparative fitness browser

500 ntABZR87_RS08685 and ABZR87_RS08690 overlap by 4 nucleotidesABZR87_RS08690 and ABZR87_RS08695 are separated by 4 nucleotidesABZR87_RS08695 and ABZR87_RS08700 are separated by 33 nucleotidesABZR87_RS08700 and ABZR87_RS08705 are separated by 3 nucleotides ABZR87_RS08685: ABZR87_RS08685 - hypothetical protein, at 1,845,459 to 1,846,676 _RS08685 ABZR87_RS08690: ABZR87_RS08690 - polysaccharide biosynthesis protein, at 1,846,673 to 1,847,710 _RS08690 ABZR87_RS08695: ABZR87_RS08695 - capsular polysaccharide biosynthesis protein CapF, at 1,847,715 to 1,848,842 _RS08695 ABZR87_RS08700: ABZR87_RS08700 - UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing), at 1,848,876 to 1,850,006 _RS08700 ABZR87_RS08705: ABZR87_RS08705 - glycosyltransferase family 4 protein, at 1,850,010 to 1,851,242 _RS08705
Group Condition ABZR87_RS08685 ABZR87_RS08690 ABZR87_RS08695 ABZR87_RS08700 ABZR87_RS08705
soil soil sample 6; outgrowth in LB -0.8 -1.8 -5.3 -2.9 -1.9
soil soil sample 8; outgrowth in LB -0.6 -0.8 -4.9 -3.1 -1.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.0 -1.2 -5.8 -2.4 -0.8
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.0 -1.0 -5.5 -2.4 -1.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.1 -0.9 -5.2 -2.3 -0.9
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.1 -0.9 -5.1 -2.4 -0.9
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.2 -1.1 -5.1 -1.8 -1.0
soil soil sample 4; outgrowth in LB +0.0 -0.6 -5.1 -2.6 -0.8
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.2 -1.3 -4.7 -1.7 -1.2
no_plant_soil no_plant_soil sample 1; outgrowth in LB +0.1 -0.1 -5.5 -3.2 -0.2
soil soil sample 7; outgrowth in LB -0.4 -0.7 -3.7 -3.0 -0.9
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.3 -0.7 -5.1 -2.4 -0.8
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.6 -1.4 -4.7 -1.1 -1.6
carbon source propionate (C) +0.5 +0.2 -5.0 -3.8 +0.2
no_plant_rhizosphere no_plant_rhizosphere sample 1; outgrowth in LB +0.8 +0.2 -5.4 -2.1 +0.2
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB +1.9 +1.1 -6.3 -3.0 +0.7
no_plant_soil no_plant_soil sample 2; outgrowth in LB +1.1 +1.1 -5.7 -2.9 +1.0
carbon source Trans-2-methyl-2-butenoic (C) +0.9 +1.3 -4.6 -3.4 +1.1
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB +1.6 +0.7 -5.3 -2.0 +0.6
no_plant_soil no_plant_soil sample 3; outgrowth in LB +0.8 +1.5 -4.6 -3.1 +1.3
carbon source Pimelic (C) +0.6 +1.0 -3.8 -2.7 +0.8
carbon source Trans-2-methyl-2-butenoic (C) +1.0 +1.5 -4.1 -3.2 +1.4
root root EcoFAB sample 1; outgrowth in LB +1.9 +1.6 -5.5 -2.2 +1.2
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB +1.8 +1.5 -4.0 -1.5 +1.4
rhizosphere rhizosphere EcoFAB sample 2; outgrowth in LB +1.8 +2.1 -3.6 -2.3 +1.8
soil soil EcoFAB sample 1; outgrowth in LB +4.4 +2.4 -6.0 -2.4 +1.9
root root EcoFAB sample 2; outgrowth in LB +2.4 +3.8 -4.4 -1.0 +3.7
soil soil EcoFAB sample 2; outgrowth in LB +3.5 +3.4 -2.8 -1.6 +3.2
phage Ra3_1 -3.0 +6.1 +3.8 +4.3 +6.1
phage Ra1_0.1 +0.0 +6.3 +3.9 +5.0 +6.2
remove
ABZR87_RS08685
plot		 remove
ABZR87_RS08690
plot		 remove
ABZR87_RS08695		 remove
ABZR87_RS08700
plot		 remove
ABZR87_RS08705
plot