Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS08675 and ABZR87_RS08680 overlap by 4 nucleotidesABZR87_RS08680 and ABZR87_RS08685 are separated by 18 nucleotidesABZR87_RS08685 and ABZR87_RS08690 overlap by 4 nucleotidesABZR87_RS08690 and ABZR87_RS08695 are separated by 4 nucleotides ABZR87_RS08675: ABZR87_RS08675 - O-antigen translocase, at 1,842,949 to 1,844,196 _RS08675 ABZR87_RS08680: ABZR87_RS08680 - glycosyltransferase, at 1,844,193 to 1,845,440 _RS08680 ABZR87_RS08685: ABZR87_RS08685 - hypothetical protein, at 1,845,459 to 1,846,676 _RS08685 ABZR87_RS08690: ABZR87_RS08690 - polysaccharide biosynthesis protein, at 1,846,673 to 1,847,710 _RS08690 ABZR87_RS08695: ABZR87_RS08695 - capsular polysaccharide biosynthesis protein CapF, at 1,847,715 to 1,848,842 _RS08695
Group Condition ABZR87_RS08675 ABZR87_RS08680 ABZR87_RS08685 ABZR87_RS08690 ABZR87_RS08695
soil soil sample 6; outgrowth in LB N.D. -2.4 -0.8 -1.8 -5.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -1.0 +0.0 -1.2 -5.8
carbon source Octanoic (C) N.D. -3.2 -0.0 -3.3 -1.4
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -1.4 -0.0 -1.0 -5.5
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -1.5 -0.2 -1.1 -5.1
soil soil sample 8; outgrowth in LB N.D. -1.0 -0.6 -0.8 -4.9
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -1.1 -0.2 -1.3 -4.7
carbon source Sebacic (C) N.D. -3.3 -0.4 -1.3 -2.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -1.1 +0.0 -0.8 -5.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -1.0 +0.1 -0.9 -5.1
rhizosphere rhizosphere sample 6; outgrowth in LB N.D. -0.6 -0.7 -0.5 -4.8
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -0.7 +0.6 -1.4 -4.7
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -0.7 +0.3 -0.7 -5.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -0.7 +0.0 +0.3 -5.7
no_plant_rhizosphere no_plant_rhizosphere sample 1; outgrowth in LB N.D. -0.1 +0.8 +0.2 -5.4
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB N.D. +0.2 +1.6 +0.7 -5.3
no_plant_soil no_plant_soil sample 2; outgrowth in LB N.D. +0.8 +1.1 +1.1 -5.7
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB N.D. +1.0 +1.9 +1.1 -6.3
no_plant_soil no_plant_soil sample 3; outgrowth in LB N.D. +0.9 +0.8 +1.5 -4.6
carbon source Trans-2-methyl-2-butenoic (C) N.D. +1.2 +0.9 +1.3 -4.6
root root EcoFAB sample 1; outgrowth in LB N.D. +1.2 +1.9 +1.6 -5.5
carbon source Trans-2-methyl-2-butenoic (C) N.D. +1.6 +1.0 +1.5 -4.1
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB N.D. +1.3 +1.8 +1.5 -4.0
rhizosphere rhizosphere EcoFAB sample 2; outgrowth in LB N.D. +1.3 +1.8 +2.1 -3.6
soil soil EcoFAB sample 1; outgrowth in LB N.D. +2.2 +4.4 +2.4 -6.0
phage Ra3_0.1 N.D. +2.2 -1.4 +2.5 +0.4
root root EcoFAB sample 2; outgrowth in LB N.D. +3.3 +2.4 +3.8 -4.4
soil soil EcoFAB sample 2; outgrowth in LB N.D. +2.9 +3.5 +3.4 -2.8
phage Ra3_1 N.D. +5.5 -3.0 +6.1 +3.8
phage Ra1_0.1 N.D. +5.7 +0.0 +6.3 +3.9
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